Gene annotation
Transcriptome id Sobic.005G087200.1
Synonym Sb05g007090
Functional annotation plant-specific domain TIGR01627 family protein, expressed
UniProt C5Y7U4
Pfam PF04669
Panther DB PTHR31444 PTHR31444:SF5
NCBI CDD -
KEGG Orthology K18801; glucuronoxylan 4-O-methyltransferase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G09990 : Protein of unknown function (DUF579)
RAP-DB (Rice) LOC_Os11g13870.1 : plant-specific domain TIGR01627 family protein, expressed
MaizeGDB (Corn) Zm00025a015579
Brachypodium -
Barley HORVU7Hr1G120340.1 , HORVU5Hr1G080580.1
Wheat TraesCS7A02G560100
Populus -


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cDNA sequences
Sobic.005G087200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G387500 IQ calmodulin-binding motif domain containing protein, expressed -
2 Sobic.009G226900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein, putative, expressed -
3 Sobic.002G164600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@microtubule-associated protein, putative, expressed -
4 Sobic.003G236701 - -
5 Sobic.003G112200 Cupin domain containing protein, expressed -
6 Sobic.001G336700 "Involved in secondary cell wall formation. Reduced mechanical strength in culms and leaves, thinner cell walls, reduced cellulose content, increased lignin content, in the mutant. The highest gene expression level in culms. The highest expression levels in vascular bundles and in sub-epidermal regions, where developing sclerenchyma cells are located."(PubMedID : 30590744)@COBRA-like protein precursor, putative, expressed -
7 Sobic.001G406700 expressed protein -
8 Sobic.009G241600 Expressed in older stem(PubMedID : 28649278)@zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K18753: butyrate response factor
9 Sobic.008G112200 Expressed in middle stem(PubMedID : 28649278)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
10 Sobic.007G223600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
11 Sobic.008G059800 expressed protein -
12 Sobic.006G226200 kinesin motor domain containing protein, putative, expressed K10405: kinesin family member C1
13 Sobic.002G205500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@CESA9 - cellulose synthase, expressed K10999: cellulose synthase A
14 Sobic.006G066500 expressed protein -
15 Sobic.001G224300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@-(PubMedID : 28944535)@CESA7 - cellulose synthase, expressed K10999: cellulose synthase A
16 Sobic.003G251800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
17 Sobic.003G296400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CESA4 - cellulose synthase, expressed K10999: cellulose synthase A
18 Sobic.006G144600 ARPC2B, putative, expressed K05758: actin related protein 2/3 complex, subunit 2
19 Sobic.009G162700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@exostosin family domain containing protein, expressed -
20 Sobic.002G352000 expressed protein -


Gene co-expression network
sample Sobic005G087200 Sobic005G087200 Sobic003G387500 Sobic003G387500 Sobic005G087200--Sobic003G387500 Sobic009G226900 Sobic009G226900 Sobic005G087200--Sobic009G226900 Sobic002G164600 Sobic002G164600 Sobic005G087200--Sobic002G164600 Sobic003G236701 Sobic003G236701 Sobic005G087200--Sobic003G236701 Sobic003G112200 Sobic003G112200 Sobic005G087200--Sobic003G112200 Sobic001G336700 Sobic001G336700 Sobic005G087200--Sobic001G336700 Sobic001G406700 Sobic001G406700 Sobic005G087200--Sobic001G406700 Sobic009G241600 Sobic009G241600 Sobic005G087200--Sobic009G241600 Sobic008G112200 Sobic008G112200 Sobic005G087200--Sobic008G112200 Sobic003G387500--Sobic001G406700 Sobic006G144600 Sobic006G144600 Sobic003G387500--Sobic006G144600 Sobic001G224300 Sobic001G224300 Sobic003G387500--Sobic001G224300 Sobic010G232500 Sobic010G232500 Sobic003G387500--Sobic010G232500 Sobic002G167600 Sobic002G167600 Sobic003G387500--Sobic002G167600 Sobic009G170500 Sobic009G170500 Sobic003G387500--Sobic009G170500 Sobic009G162700 Sobic009G162700 Sobic003G387500--Sobic009G162700 Sobic002G205500 Sobic002G205500 Sobic003G387500--Sobic002G205500 Sobic003G387500--Sobic009G226900 Sobic003G062000 Sobic003G062000 Sobic009G226900--Sobic003G062000 Sobic009G226900--Sobic001G224300 Sobic003G296400 Sobic003G296400 Sobic009G226900--Sobic003G296400 Sobic009G226900--Sobic002G205500 Sobic009G226900--Sobic003G387500 Sobic006G036400 Sobic006G036400 Sobic009G226900--Sobic006G036400 Sobic009G226900--Sobic001G406700 Sobic009G226900--Sobic005G087200 Sobic006G075000 Sobic006G075000 Sobic009G226900--Sobic006G075000 Sobic002G164600--Sobic003G236701 Sobic007G223600 Sobic007G223600 Sobic002G164600--Sobic007G223600 Sobic008G059800 Sobic008G059800 Sobic002G164600--Sobic008G059800 Sobic006G226200 Sobic006G226200 Sobic002G164600--Sobic006G226200 Sobic002G164600--Sobic003G112200 Sobic006G066500 Sobic006G066500 Sobic002G164600--Sobic006G066500 Sobic006G209300 Sobic006G209300 Sobic002G164600--Sobic006G209300 Sobic002G164600--Sobic009G241600 Sobic005G229100 Sobic005G229100 Sobic002G164600--Sobic005G229100 Sobic003G236701--Sobic006G066500 Sobic003G236701--Sobic002G164600 Sobic003G236701--Sobic009G241600 Sobic003G236701--Sobic006G226200 Sobic003G236701--Sobic003G112200 Sobic003G236701--Sobic007G223600 Sobic003G236701--Sobic008G059800 Sobic003G231500 Sobic003G231500 Sobic003G236701--Sobic003G231500 Sobic001G238600 Sobic001G238600 Sobic003G236701--Sobic001G238600 Sobic003G112200--Sobic006G066500 Sobic003G112200--Sobic003G236701 Sobic003G112200--Sobic006G226200 Sobic003G112200--Sobic002G164600 Sobic001G422300 Sobic001G422300 Sobic003G112200--Sobic001G422300 Sobic003G112200--Sobic003G231500 Sobic003G112200--Sobic009G241600 Sobic004G125400 Sobic004G125400 Sobic003G112200--Sobic004G125400 Sobic003G220000 Sobic003G220000 Sobic003G112200--Sobic003G220000 Sobic002G082300 Sobic002G082300 Sobic001G336700--Sobic002G082300 Sobic010G022400 Sobic010G022400 Sobic001G336700--Sobic010G022400 Sobic001G336700--Sobic009G226900 Sobic001G336700--Sobic002G205500 Sobic001G336700--Sobic006G226200 Sobic001G336700--Sobic003G387500 Sobic009G048000 Sobic009G048000 Sobic001G336700--Sobic009G048000 Sobic001G336700--Sobic005G087200 Sobic001G336700--Sobic003G296400 Sobic001G406700--Sobic003G387500 Sobic001G406700--Sobic006G144600 Sobic001G399200 Sobic001G399200 Sobic001G406700--Sobic001G399200 Sobic001G406700--Sobic009G170500 Sobic001G406700--Sobic010G232500 Sobic001G406700--Sobic002G167600 Sobic001G406700--Sobic005G229100 Sobic007G119500 Sobic007G119500 Sobic001G406700--Sobic007G119500 Sobic009G246700 Sobic009G246700 Sobic001G406700--Sobic009G246700 Sobic009G241600--Sobic003G236701 Sobic007G027200 Sobic007G027200 Sobic009G241600--Sobic007G027200 Sobic009G241600--Sobic006G066500 Sobic009G241600--Sobic008G059800 Sobic009G241600--Sobic002G164600 Sobic010G199700 Sobic010G199700 Sobic009G241600--Sobic010G199700 Sobic009G241600--Sobic008G112200 Sobic009G241600--Sobic003G112200 Sobic006G166800 Sobic006G166800 Sobic009G241600--Sobic006G166800 Sobic008G112200--Sobic010G199700 Sobic008G112200--Sobic009G241600 Sobic008G112200--Sobic008G059800 Sobic001G066900 Sobic001G066900 Sobic008G112200--Sobic001G066900 Sobic008G112200--Sobic003G236701 Sobic009G153800 Sobic009G153800 Sobic008G112200--Sobic009G153800 Sobic001G468300 Sobic001G468300 Sobic008G112200--Sobic001G468300 Sobic008G112200--Sobic002G164600 Sobic008G112200--Sobic009G226900
Octagon: transcription factors


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