Gene annotation
Transcriptome id Sobic.002G082300.1
Synonym Sb02g006880
Functional annotation expressed protein
UniProt C5XDH4
Pfam PF05097
Panther DB PTHR33257 PTHR33257:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G40475 : -
RAP-DB (Rice) LOC_Os01g07240.1 : expressed protein
MaizeGDB (Corn) Zm00025a008755 , Zm00025a045443
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G336700 "Involved in secondary cell wall formation. Reduced mechanical strength in culms and leaves, thinner cell walls, reduced cellulose content, increased lignin content, in the mutant. The highest gene expression level in culms. The highest expression levels in vascular bundles and in sub-epidermal regions, where developing sclerenchyma cells are located."(PubMedID : 30590744)@COBRA-like protein precursor, putative, expressed -
2 Sobic.003G220000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ABC-2 type transporter domain containing protein, expressed -
3 Sobic.006G226200 kinesin motor domain containing protein, putative, expressed K10405: kinesin family member C1
4 Sobic.003G254700 glycosyltransferase family 43 protein, putative, expressed -
5 Sobic.009G246700 CAS1 domain-containing protein 1 precursor, putative, expressed -
6 Sobic.003G112200 Cupin domain containing protein, expressed -
7 Sobic.002G118700 -(PubMedID : 28944535)@CESA3 - cellulose synthase, expressed K10999: cellulose synthase A
8 Sobic.002G164600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@microtubule-associated protein, putative, expressed -
9 Sobic.010G232500 peroxidase precursor, putative, expressed K00430: peroxidase
10 Sobic.004G005300 serine/threonine-protein kinase At1g18390 precursor, putative, expressed -
11 Sobic.003G231500 pectinesterase, putative, expressed K01051: pectinesterase
12 Sobic.009G226900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein, putative, expressed -
13 Sobic.003G236701 - -
14 Sobic.006G066500 expressed protein -
15 Sobic.009G241600 Expressed in older stem(PubMedID : 28649278)@zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K18753: butyrate response factor
16 Sobic.007G223600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
17 Sobic.010G112800 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
18 Sobic.001G238600 zinc finger, C3HC4 type domain containing protein, expressed -
19 Sobic.003G153400 GDSL-like lipase/acylhydrolase, putative, expressed -
20 Sobic.003G296400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CESA4 - cellulose synthase, expressed K10999: cellulose synthase A


Gene co-expression network
sample Sobic002G082300 Sobic002G082300 Sobic001G336700 Sobic001G336700 Sobic002G082300--Sobic001G336700 Sobic003G220000 Sobic003G220000 Sobic002G082300--Sobic003G220000 Sobic006G226200 Sobic006G226200 Sobic002G082300--Sobic006G226200 Sobic003G254700 Sobic003G254700 Sobic002G082300--Sobic003G254700 Sobic009G246700 Sobic009G246700 Sobic002G082300--Sobic009G246700 Sobic003G112200 Sobic003G112200 Sobic002G082300--Sobic003G112200 Sobic002G118700 Sobic002G118700 Sobic002G082300--Sobic002G118700 Sobic002G164600 Sobic002G164600 Sobic002G082300--Sobic002G164600 Sobic010G232500 Sobic010G232500 Sobic002G082300--Sobic010G232500 Sobic001G336700--Sobic002G082300 Sobic010G022400 Sobic010G022400 Sobic001G336700--Sobic010G022400 Sobic009G226900 Sobic009G226900 Sobic001G336700--Sobic009G226900 Sobic002G205500 Sobic002G205500 Sobic001G336700--Sobic002G205500 Sobic001G336700--Sobic006G226200 Sobic003G387500 Sobic003G387500 Sobic001G336700--Sobic003G387500 Sobic009G048000 Sobic009G048000 Sobic001G336700--Sobic009G048000 Sobic005G087200 Sobic005G087200 Sobic001G336700--Sobic005G087200 Sobic003G296400 Sobic003G296400 Sobic001G336700--Sobic003G296400 Sobic001G238600 Sobic001G238600 Sobic003G220000--Sobic001G238600 Sobic006G066500 Sobic006G066500 Sobic003G220000--Sobic006G066500 Sobic003G231500 Sobic003G231500 Sobic003G220000--Sobic003G231500 Sobic001G422300 Sobic001G422300 Sobic003G220000--Sobic001G422300 Sobic008G010400 Sobic008G010400 Sobic003G220000--Sobic008G010400 Sobic003G220000--Sobic003G112200 Sobic003G220000--Sobic006G226200 Sobic003G236701 Sobic003G236701 Sobic003G220000--Sobic003G236701 Sobic007G175400 Sobic007G175400 Sobic003G220000--Sobic007G175400 Sobic006G226200--Sobic003G236701 Sobic006G226200--Sobic006G066500 Sobic007G223600 Sobic007G223600 Sobic006G226200--Sobic007G223600 Sobic006G226200--Sobic003G112200 Sobic006G226200--Sobic002G164600 Sobic006G226200--Sobic003G296400 Sobic006G226200--Sobic009G048000 Sobic006G226200--Sobic003G231500 Sobic006G226200--Sobic002G205500 Sobic004G111100 Sobic004G111100 Sobic003G254700--Sobic004G111100 Sobic004G007600 Sobic004G007600 Sobic003G254700--Sobic004G007600 Sobic001G133900 Sobic001G133900 Sobic003G254700--Sobic001G133900 Sobic009G026101 Sobic009G026101 Sobic003G254700--Sobic009G026101 Sobic001G072600 Sobic001G072600 Sobic003G254700--Sobic001G072600 Sobic003G254700--Sobic009G246700 Sobic009G125900 Sobic009G125900 Sobic003G254700--Sobic009G125900 Sobic002G075500 Sobic002G075500 Sobic003G254700--Sobic002G075500 Sobic002G218900 Sobic002G218900 Sobic003G254700--Sobic002G218900 Sobic009G246700--Sobic001G133900 Sobic009G246700--Sobic009G026101 Sobic001G406700 Sobic001G406700 Sobic009G246700--Sobic001G406700 Sobic007G119500 Sobic007G119500 Sobic009G246700--Sobic007G119500 Sobic009G246700--Sobic001G072600 Sobic002G167600 Sobic002G167600 Sobic009G246700--Sobic002G167600 Sobic001G360700 Sobic001G360700 Sobic009G246700--Sobic001G360700 Sobic001G460400 Sobic001G460400 Sobic009G246700--Sobic001G460400 Sobic006G144600 Sobic006G144600 Sobic009G246700--Sobic006G144600 Sobic003G112200--Sobic006G066500 Sobic003G112200--Sobic003G236701 Sobic003G112200--Sobic006G226200 Sobic003G112200--Sobic002G164600 Sobic003G112200--Sobic001G422300 Sobic003G112200--Sobic003G231500 Sobic009G241600 Sobic009G241600 Sobic003G112200--Sobic009G241600 Sobic004G125400 Sobic004G125400 Sobic003G112200--Sobic004G125400 Sobic003G112200--Sobic003G220000 Sobic009G063400 Sobic009G063400 Sobic002G118700--Sobic009G063400 Sobic002G118700--Sobic009G125900 Sobic002G118700--Sobic002G075500 Sobic001G099100 Sobic001G099100 Sobic002G118700--Sobic001G099100 Sobic004G051300 Sobic004G051300 Sobic002G118700--Sobic004G051300 Sobic002G118700--Sobic009G026101 Sobic010G090500 Sobic010G090500 Sobic002G118700--Sobic010G090500 Sobic007G180900 Sobic007G180900 Sobic002G118700--Sobic007G180900 Sobic002G276600 Sobic002G276600 Sobic002G118700--Sobic002G276600 Sobic002G164600--Sobic003G236701 Sobic002G164600--Sobic007G223600 Sobic008G059800 Sobic008G059800 Sobic002G164600--Sobic008G059800 Sobic002G164600--Sobic006G226200 Sobic002G164600--Sobic003G112200 Sobic002G164600--Sobic006G066500 Sobic006G209300 Sobic006G209300 Sobic002G164600--Sobic006G209300 Sobic002G164600--Sobic009G241600 Sobic005G229100 Sobic005G229100 Sobic002G164600--Sobic005G229100 Sobic010G232500--Sobic006G144600 Sobic010G232500--Sobic001G406700 Sobic010G232500--Sobic005G229100 Sobic010G232500--Sobic003G387500 Sobic010G232500--Sobic006G226200 Sobic010G232500--Sobic002G167600 Sobic001G399200 Sobic001G399200 Sobic010G232500--Sobic001G399200 Sobic010G232500--Sobic003G231500 Sobic010G232500--Sobic007G223600
Octagon: transcription factors


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