Gene annotation
Transcriptome id Sobic.004G163600.1,Sobic.004G163600.2
Synonym Sb04g021530
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt C5XTD3
Pfam PF04949
Panther DB PTHR21470 PTHR21470:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G27740 : Family of unknown function (DUF662)
RAP-DB (Rice) LOC_Os02g32650.1 : expressed protein
MaizeGDB (Corn) Zm00025a020525
Brachypodium KQJ99701
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G322300 expressed protein -
2 Sobic.002G205500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@CESA9 - cellulose synthase, expressed K10999: cellulose synthase A
3 Sobic.003G366300 protein kinase domain containing protein, expressed K08857: NIMA (never in mitosis gene a)-related kinase 1/4/5
4 Sobic.003G296400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CESA4 - cellulose synthase, expressed K10999: cellulose synthase A
5 Sobic.007G223600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
6 Sobic.001G224300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@-(PubMedID : 28944535)@CESA7 - cellulose synthase, expressed K10999: cellulose synthase A
7 Sobic.009G079100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
8 Sobic.001G406700 expressed protein -
9 Sobic.009G162500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K05280: flavonoid 3'-monooxygenase
10 Sobic.003G270400 zinc finger, C3HC4 type domain containing protein, expressed -
11 Sobic.003G386200 zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.006G036400 zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.009G226900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein, putative, expressed -
14 Sobic.007G119500 expressed protein -
15 Sobic.002G218900 plant viral response family protein, putative, expressed -
16 Sobic.003G247600 serine/threonine-protein kinase, putative, expressed -
17 Sobic.008G021900 nucleoside-triphosphatase, putative, expressed K14641: apyrase
18 Sobic.003G198500 XIK, putative, expressed K10357: myosin V
19 Sobic.003G387500 IQ calmodulin-binding motif domain containing protein, expressed -
20 Sobic.001G360700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K13083: flavonoid 3',5'-hydroxylase


Gene co-expression network
sample Sobic004G163600 Sobic004G163600 Sobic002G322300 Sobic002G322300 Sobic004G163600--Sobic002G322300 Sobic002G205500 Sobic002G205500 Sobic004G163600--Sobic002G205500 Sobic003G366300 Sobic003G366300 Sobic004G163600--Sobic003G366300 Sobic003G296400 Sobic003G296400 Sobic004G163600--Sobic003G296400 Sobic007G223600 Sobic007G223600 Sobic004G163600--Sobic007G223600 Sobic001G224300 Sobic001G224300 Sobic004G163600--Sobic001G224300 Sobic009G079100 Sobic009G079100 Sobic004G163600--Sobic009G079100 Sobic001G406700 Sobic001G406700 Sobic004G163600--Sobic001G406700 Sobic009G162500 Sobic009G162500 Sobic004G163600--Sobic009G162500 Sobic002G322300--Sobic004G163600 Sobic004G221300 Sobic004G221300 Sobic002G322300--Sobic004G221300 Sobic001G245800 Sobic001G245800 Sobic002G322300--Sobic001G245800 Sobic008G157000 Sobic008G157000 Sobic002G322300--Sobic008G157000 Sobic006G036400 Sobic006G036400 Sobic002G322300--Sobic006G036400 Sobic002G322300--Sobic003G296400 Sobic002G322300--Sobic002G205500 Sobic009G034300 Sobic009G034300 Sobic002G322300--Sobic009G034300 Sobic002G203900 Sobic002G203900 Sobic002G322300--Sobic002G203900 Sobic002G205500--Sobic003G296400 Sobic002G205500--Sobic001G224300 Sobic002G205500--Sobic007G223600 Sobic006G226200 Sobic006G226200 Sobic002G205500--Sobic006G226200 Sobic005G229100 Sobic005G229100 Sobic002G205500--Sobic005G229100 Sobic003G387500 Sobic003G387500 Sobic002G205500--Sobic003G387500 Sobic009G048000 Sobic009G048000 Sobic002G205500--Sobic009G048000 Sobic002G205500--Sobic006G036400 Sobic009G226900 Sobic009G226900 Sobic002G205500--Sobic009G226900 Sobic003G270400 Sobic003G270400 Sobic003G366300--Sobic003G270400 Sobic005G112000 Sobic005G112000 Sobic003G366300--Sobic005G112000 Sobic001G388000 Sobic001G388000 Sobic003G366300--Sobic001G388000 Sobic007G091900 Sobic007G091900 Sobic003G366300--Sobic007G091900 Sobic007G119500 Sobic007G119500 Sobic003G366300--Sobic007G119500 Sobic005G110600 Sobic005G110600 Sobic003G366300--Sobic005G110600 Sobic003G099166 Sobic003G099166 Sobic003G366300--Sobic003G099166 Sobic003G366300--Sobic004G163600 Sobic003G198500 Sobic003G198500 Sobic003G366300--Sobic003G198500 Sobic003G296400--Sobic002G205500 Sobic003G296400--Sobic001G224300 Sobic003G296400--Sobic006G036400 Sobic003G296400--Sobic007G223600 Sobic003G296400--Sobic006G226200 Sobic003G296400--Sobic009G226900 Sobic003G296400--Sobic009G048000 Sobic003G296400--Sobic004G221300 Sobic003G236701 Sobic003G236701 Sobic003G296400--Sobic003G236701 Sobic002G164600 Sobic002G164600 Sobic007G223600--Sobic002G164600 Sobic007G223600--Sobic002G205500 Sobic007G223600--Sobic006G226200 Sobic007G223600--Sobic003G236701 Sobic007G223600--Sobic003G296400 Sobic007G223600--Sobic005G229100 Sobic006G066500 Sobic006G066500 Sobic007G223600--Sobic006G066500 Sobic007G223600--Sobic001G224300 Sobic008G059800 Sobic008G059800 Sobic007G223600--Sobic008G059800 Sobic001G224300--Sobic003G296400 Sobic001G224300--Sobic002G205500 Sobic001G224300--Sobic006G036400 Sobic001G224300--Sobic003G387500 Sobic001G224300--Sobic009G226900 Sobic001G224300--Sobic007G223600 Sobic001G224300--Sobic009G034300 Sobic001G224300--Sobic004G221300 Sobic001G409100 Sobic001G409100 Sobic001G224300--Sobic001G409100 Sobic010G090500 Sobic010G090500 Sobic009G079100--Sobic010G090500 Sobic009G079100--Sobic003G198500 Sobic009G026101 Sobic009G026101 Sobic009G079100--Sobic009G026101 Sobic004G051300 Sobic004G051300 Sobic009G079100--Sobic004G051300 Sobic007G040301 Sobic007G040301 Sobic009G079100--Sobic007G040301 Sobic007G211600 Sobic007G211600 Sobic009G079100--Sobic007G211600 Sobic001G133900 Sobic001G133900 Sobic009G079100--Sobic001G133900 Sobic009G246700 Sobic009G246700 Sobic009G079100--Sobic009G246700 Sobic009G206500 Sobic009G206500 Sobic009G079100--Sobic009G206500 Sobic001G406700--Sobic003G387500 Sobic006G144600 Sobic006G144600 Sobic001G406700--Sobic006G144600 Sobic001G399200 Sobic001G399200 Sobic001G406700--Sobic001G399200 Sobic009G170500 Sobic009G170500 Sobic001G406700--Sobic009G170500 Sobic010G232500 Sobic010G232500 Sobic001G406700--Sobic010G232500 Sobic002G167600 Sobic002G167600 Sobic001G406700--Sobic002G167600 Sobic001G406700--Sobic005G229100 Sobic001G406700--Sobic007G119500 Sobic001G406700--Sobic009G246700 Sobic009G162500--Sobic003G296400 Sobic009G162500--Sobic002G205500 Sobic003G062000 Sobic003G062000 Sobic009G162500--Sobic003G062000 Sobic003G151300 Sobic003G151300 Sobic009G162500--Sobic003G151300 Sobic002G003200 Sobic002G003200 Sobic009G162500--Sobic002G003200 Sobic009G162500--Sobic003G366300 Sobic001G535400 Sobic001G535400 Sobic009G162500--Sobic001G535400 Sobic009G153800 Sobic009G153800 Sobic009G162500--Sobic009G153800 Sobic009G032600 Sobic009G032600 Sobic009G162500--Sobic009G032600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.