Gene annotation
Transcriptome id Sobic.003G198500.1,Sobic.003G198500.2
Synonym XI-17, ATXIK, XIK, Sb03g026100
Functional annotation XIK, putative, expressed
UniProt A0A1B6Q4E2
Pfam PF00612 PF01843
Panther DB PTHR13140 PTHR13140:SF390
NCBI CDD KOG3228; Uncharacterized conserved protein
KEGG Orthology K10357; myosin V
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G54560 : Myosin family protein with Dil domain
RAP-DB (Rice) LOC_Os01g40200.1 : XIK, putative, expressed
MaizeGDB (Corn) Zm00025a038382
Brachypodium KQK08455 , KQK08456 , KQK08454 , PNT72268 , KQK08453 , PNT72267
Barley HORVU3Hr1G011330.8 , HORVU3Hr1G011330.1 , HORVU3Hr1G011330.2 , HORVU3Hr1G011330.5 , HORVU3Hr1G011330.4 , HORVU3Hr1G011330.7 , HORVU3Hr1G011330.6 , HORVU3Hr1G011330.15 , HORVU3Hr1G011330.14 , HORVU3Hr1G011330.17 , HORVU3Hr1G011330.11 , HORVU3Hr1G011330.13 , HORVU3Hr1G011330.12 , HORVU3Hr1G011330.9
Wheat TraesCS3B02G070600 , TraesCS3B02G070600 , TraesCS3B02G070600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G198500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G079100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
2 Sobic.010G090500 expressed protein -
3 Sobic.001G073150 - K15449: tRNA wybutosine-synthesizing protein 1
4 Sobic.003G366300 protein kinase domain containing protein, expressed K08857: NIMA (never in mitosis gene a)-related kinase 1/4/5
5 Sobic.002G312700 myosin heavy chain-related, putative, expressed -
6 Sobic.004G051300 galactosyltransferase, putative, expressed -
7 Sobic.009G246700 CAS1 domain-containing protein 1 precursor, putative, expressed -
8 Sobic.010G022400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
9 Sobic.008G174800 DNA binding protein, putative, expressed -
10 Sobic.010G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
11 Sobic.001G366800 alpha-N-acetylglucosaminidase, putative, expressed K01205: alpha-N-acetylglucosaminidase
12 Sobic.008G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@N-acetylglucosaminyltransferase, putative, expressed -
13 Sobic.001G133900 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
14 Sobic.010G120300 tm-1GCR237 protein, putative, expressed -
15 Sobic.006G179700 Ser/Thr-rich protein T10 in DGCR region, putative, expressed -
16 Sobic.001G183600 galactosyltransferase, putative, expressed -
17 Sobic.007G172500 zinc finger family protein, putative, expressed -
18 Sobic.004G163600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.003G270400 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.009G125900 expressed protein -


Gene co-expression network
sample Sobic003G198500 Sobic003G198500 Sobic009G079100 Sobic009G079100 Sobic003G198500--Sobic009G079100 Sobic010G090500 Sobic010G090500 Sobic003G198500--Sobic010G090500 Sobic001G073150 Sobic001G073150 Sobic003G198500--Sobic001G073150 Sobic003G366300 Sobic003G366300 Sobic003G198500--Sobic003G366300 Sobic002G312700 Sobic002G312700 Sobic003G198500--Sobic002G312700 Sobic004G051300 Sobic004G051300 Sobic003G198500--Sobic004G051300 Sobic009G246700 Sobic009G246700 Sobic003G198500--Sobic009G246700 Sobic010G022400 Sobic010G022400 Sobic003G198500--Sobic010G022400 Sobic008G174800 Sobic008G174800 Sobic003G198500--Sobic008G174800 Sobic009G079100--Sobic010G090500 Sobic009G079100--Sobic003G198500 Sobic009G026101 Sobic009G026101 Sobic009G079100--Sobic009G026101 Sobic009G079100--Sobic004G051300 Sobic007G040301 Sobic007G040301 Sobic009G079100--Sobic007G040301 Sobic007G211600 Sobic007G211600 Sobic009G079100--Sobic007G211600 Sobic001G133900 Sobic001G133900 Sobic009G079100--Sobic001G133900 Sobic009G079100--Sobic009G246700 Sobic009G206500 Sobic009G206500 Sobic009G079100--Sobic009G206500 Sobic001G159800 Sobic001G159800 Sobic010G090500--Sobic001G159800 Sobic010G120300 Sobic010G120300 Sobic010G090500--Sobic010G120300 Sobic010G090500--Sobic009G206500 Sobic010G090500--Sobic009G079100 Sobic001G437500 Sobic001G437500 Sobic010G090500--Sobic001G437500 Sobic006G267500 Sobic006G267500 Sobic010G090500--Sobic006G267500 Sobic010G090500--Sobic001G073150 Sobic009G061000 Sobic009G061000 Sobic010G090500--Sobic009G061000 Sobic009G125900 Sobic009G125900 Sobic010G090500--Sobic009G125900 Sobic001G073150--Sobic010G120300 Sobic001G073150--Sobic010G090500 Sobic001G073150--Sobic003G198500 Sobic008G191500 Sobic008G191500 Sobic001G073150--Sobic008G191500 Sobic010G096100 Sobic010G096100 Sobic001G073150--Sobic010G096100 Sobic001G073150--Sobic009G125900 Sobic009G251100 Sobic009G251100 Sobic001G073150--Sobic009G251100 Sobic001G073150--Sobic001G159800 Sobic008G174900 Sobic008G174900 Sobic001G073150--Sobic008G174900 Sobic003G270400 Sobic003G270400 Sobic003G366300--Sobic003G270400 Sobic005G112000 Sobic005G112000 Sobic003G366300--Sobic005G112000 Sobic001G388000 Sobic001G388000 Sobic003G366300--Sobic001G388000 Sobic007G091900 Sobic007G091900 Sobic003G366300--Sobic007G091900 Sobic007G119500 Sobic007G119500 Sobic003G366300--Sobic007G119500 Sobic005G110600 Sobic005G110600 Sobic003G366300--Sobic005G110600 Sobic003G099166 Sobic003G099166 Sobic003G366300--Sobic003G099166 Sobic004G163600 Sobic004G163600 Sobic003G366300--Sobic004G163600 Sobic003G366300--Sobic003G198500 Sobic007G172500 Sobic007G172500 Sobic002G312700--Sobic007G172500 Sobic002G312700--Sobic003G198500 Sobic006G109500 Sobic006G109500 Sobic002G312700--Sobic006G109500 Sobic005G022500 Sobic005G022500 Sobic002G312700--Sobic005G022500 Sobic002G312700--Sobic010G090500 Sobic002G312700--Sobic009G079100 Sobic007G106500 Sobic007G106500 Sobic002G312700--Sobic007G106500 Sobic004G161200 Sobic004G161200 Sobic002G312700--Sobic004G161200 Sobic008G097500 Sobic008G097500 Sobic002G312700--Sobic008G097500 Sobic001G099100 Sobic001G099100 Sobic004G051300--Sobic001G099100 Sobic002G118700 Sobic002G118700 Sobic004G051300--Sobic002G118700 Sobic004G051300--Sobic009G125900 Sobic002G075500 Sobic002G075500 Sobic004G051300--Sobic002G075500 Sobic004G051300--Sobic009G026101 Sobic002G276600 Sobic002G276600 Sobic004G051300--Sobic002G276600 Sobic004G051300--Sobic009G079100 Sobic004G051300--Sobic010G090500 Sobic009G063400 Sobic009G063400 Sobic004G051300--Sobic009G063400 Sobic009G246700--Sobic001G133900 Sobic009G246700--Sobic009G026101 Sobic001G406700 Sobic001G406700 Sobic009G246700--Sobic001G406700 Sobic009G246700--Sobic007G119500 Sobic001G072600 Sobic001G072600 Sobic009G246700--Sobic001G072600 Sobic002G167600 Sobic002G167600 Sobic009G246700--Sobic002G167600 Sobic001G360700 Sobic001G360700 Sobic009G246700--Sobic001G360700 Sobic001G460400 Sobic001G460400 Sobic009G246700--Sobic001G460400 Sobic006G144600 Sobic006G144600 Sobic009G246700--Sobic006G144600 Sobic010G022400--Sobic001G406700 Sobic003G387500 Sobic003G387500 Sobic010G022400--Sobic003G387500 Sobic001G336700 Sobic001G336700 Sobic010G022400--Sobic001G336700 Sobic010G180100 Sobic010G180100 Sobic010G022400--Sobic010G180100 Sobic009G226900 Sobic009G226900 Sobic010G022400--Sobic009G226900 Sobic009G170500 Sobic009G170500 Sobic010G022400--Sobic009G170500 Sobic010G022400--Sobic002G167600 Sobic005G107500 Sobic005G107500 Sobic010G022400--Sobic005G107500 Sobic002G254900 Sobic002G254900 Sobic010G022400--Sobic002G254900 Sobic003G151300 Sobic003G151300 Sobic008G174800--Sobic003G151300 Sobic009G026200 Sobic009G026200 Sobic008G174800--Sobic009G026200 Sobic008G174800--Sobic003G198500 Sobic004G247300 Sobic004G247300 Sobic008G174800--Sobic004G247300 Sobic008G174800--Sobic009G079100 Sobic008G174800--Sobic004G051300 Sobic008G008400 Sobic008G008400 Sobic008G174800--Sobic008G008400 Sobic010G060600 Sobic010G060600 Sobic008G174800--Sobic010G060600 Sobic004G134100 Sobic004G134100 Sobic008G174800--Sobic004G134100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.