Gene annotation
Transcriptome id Sobic.001G073150.1
Synonym -
Functional annotation -
UniProt C5WZ58
Pfam PF00258 PF04055 PF08608 PF03141
Panther DB PTHR13930 PTHR13930:SF0
NCBI CDD -
KEGG Orthology K15449; tRNA wybutosine-synthesizing protein 1
Gene Ontology GO:0010181; FMN binding GO:0003824catalytic activity GO:0008168methyltransferase activity


Orthologs (automatic annotation)
TAIR AT1G75200 : flavodoxin family protein / radical SAM domain-containing protein
RAP-DB (Rice) LOC_Os03g56380.1 : methyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a008379 , Zm00025a008380
Brachypodium KQK12965 , KQK12966
Barley HORVU5Hr1G099090.10 , HORVU5Hr1G099090.6 , HORVU5Hr1G099090.7 , HORVU5Hr1G099090.4 , HORVU5Hr1G099090.2 , HORVU5Hr1G099090.3 , HORVU5Hr1G099090.1 , HORVU5Hr1G099090.8 , HORVU5Hr1G099090.9
Wheat TraesCS5B02G413400 , TraesCS5B02G413400 , TraesCS5B02G413400 , TraesCS5D02G418600 , TraesCS5D02G418500 , TraesCS5B02G413500 , TraesCS5A02G408700 , TraesCS5A02G408800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G120300 tm-1GCR237 protein, putative, expressed -
2 Sobic.010G090500 expressed protein -
3 Sobic.003G198500 XIK, putative, expressed K10357: myosin V
4 Sobic.008G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@N-acetylglucosaminyltransferase, putative, expressed -
5 Sobic.010G096100 ras-related protein, putative, expressed K04392: Ras-related C3 botulinum toxin substrate 1
6 Sobic.009G125900 expressed protein -
7 Sobic.009G251100 TTL1, putative, expressed K09527: DnaJ homolog subfamily C member 7
8 Sobic.001G159800 KIP1, putative, expressed -
9 Sobic.008G174900 IQ calmodulin-binding motif domain containing protein, expressed -
10 Sobic.002G145300 ZOS7-13 - C2H2 zinc finger protein, expressed K11436: type I protein arginine methyltransferase
11 Sobic.003G366300 protein kinase domain containing protein, expressed K08857: NIMA (never in mitosis gene a)-related kinase 1/4/5
12 Sobic.009G063400 "CESA1-like or CESA10-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@CESA1 - cellulose synthase, expressed K10999: cellulose synthase A
13 Sobic.001G196000 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
14 Sobic.005G012800 expressed protein -
15 Sobic.009G206500 respiratory burst oxidase, putative, expressed K13447: respiratory burst oxidase
16 Sobic.003G270400 zinc finger, C3HC4 type domain containing protein, expressed -
17 Sobic.002G393200 CAMK_CAMK_like.36 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
18 Sobic.001G222400 tetratricopeptide repeat domain containing protein, expressed -
19 Sobic.002G083600 AP2 domain containing protein, expressed K09284: AP2-like factor, euAP2 lineage
20 Sobic.001G366800 alpha-N-acetylglucosaminidase, putative, expressed K01205: alpha-N-acetylglucosaminidase


Gene co-expression network
sample Sobic001G073150 Sobic001G073150 Sobic010G120300 Sobic010G120300 Sobic001G073150--Sobic010G120300 Sobic010G090500 Sobic010G090500 Sobic001G073150--Sobic010G090500 Sobic003G198500 Sobic003G198500 Sobic001G073150--Sobic003G198500 Sobic008G191500 Sobic008G191500 Sobic001G073150--Sobic008G191500 Sobic010G096100 Sobic010G096100 Sobic001G073150--Sobic010G096100 Sobic009G125900 Sobic009G125900 Sobic001G073150--Sobic009G125900 Sobic009G251100 Sobic009G251100 Sobic001G073150--Sobic009G251100 Sobic001G159800 Sobic001G159800 Sobic001G073150--Sobic001G159800 Sobic008G174900 Sobic008G174900 Sobic001G073150--Sobic008G174900 Sobic010G120300--Sobic001G073150 Sobic010G120300--Sobic010G090500 Sobic010G120300--Sobic009G251100 Sobic010G120300--Sobic001G159800 Sobic010G120300--Sobic008G174900 Sobic001G131700 Sobic001G131700 Sobic010G120300--Sobic001G131700 Sobic003G267000 Sobic003G267000 Sobic010G120300--Sobic003G267000 Sobic010G120300--Sobic009G125900 Sobic001G021500 Sobic001G021500 Sobic010G120300--Sobic001G021500 Sobic010G090500--Sobic001G159800 Sobic010G090500--Sobic010G120300 Sobic009G206500 Sobic009G206500 Sobic010G090500--Sobic009G206500 Sobic009G079100 Sobic009G079100 Sobic010G090500--Sobic009G079100 Sobic001G437500 Sobic001G437500 Sobic010G090500--Sobic001G437500 Sobic006G267500 Sobic006G267500 Sobic010G090500--Sobic006G267500 Sobic010G090500--Sobic001G073150 Sobic009G061000 Sobic009G061000 Sobic010G090500--Sobic009G061000 Sobic010G090500--Sobic009G125900 Sobic003G198500--Sobic009G079100 Sobic003G198500--Sobic010G090500 Sobic003G198500--Sobic001G073150 Sobic003G366300 Sobic003G366300 Sobic003G198500--Sobic003G366300 Sobic002G312700 Sobic002G312700 Sobic003G198500--Sobic002G312700 Sobic004G051300 Sobic004G051300 Sobic003G198500--Sobic004G051300 Sobic009G246700 Sobic009G246700 Sobic003G198500--Sobic009G246700 Sobic010G022400 Sobic010G022400 Sobic003G198500--Sobic010G022400 Sobic008G174800 Sobic008G174800 Sobic003G198500--Sobic008G174800 Sobic008G191500--Sobic010G090500 Sobic008G191500--Sobic001G159800 Sobic008G191500--Sobic009G206500 Sobic003G017500 Sobic003G017500 Sobic008G191500--Sobic003G017500 Sobic009G151700 Sobic009G151700 Sobic008G191500--Sobic009G151700 Sobic008G191500--Sobic004G051300 Sobic008G191500--Sobic001G073150 Sobic009G073400 Sobic009G073400 Sobic008G191500--Sobic009G073400 Sobic008G191500--Sobic009G061000 Sobic006G075000 Sobic006G075000 Sobic010G096100--Sobic006G075000 Sobic001G208600 Sobic001G208600 Sobic010G096100--Sobic001G208600 Sobic009G063400 Sobic009G063400 Sobic010G096100--Sobic009G063400 Sobic009G026101 Sobic009G026101 Sobic010G096100--Sobic009G026101 Sobic010G096100--Sobic009G125900 Sobic009G017500 Sobic009G017500 Sobic010G096100--Sobic009G017500 Sobic010G096100--Sobic009G251100 Sobic001G484000 Sobic001G484000 Sobic010G096100--Sobic001G484000 Sobic010G114000 Sobic010G114000 Sobic010G096100--Sobic010G114000 Sobic009G125900--Sobic009G063400 Sobic009G125900--Sobic009G026101 Sobic002G075500 Sobic002G075500 Sobic009G125900--Sobic002G075500 Sobic002G118700 Sobic002G118700 Sobic009G125900--Sobic002G118700 Sobic009G125900--Sobic010G090500 Sobic004G265600 Sobic004G265600 Sobic009G125900--Sobic004G265600 Sobic009G125900--Sobic010G096100 Sobic009G125900--Sobic004G051300 Sobic003G254700 Sobic003G254700 Sobic009G125900--Sobic003G254700 Sobic004G296300 Sobic004G296300 Sobic009G251100--Sobic004G296300 Sobic009G251100--Sobic010G120300 Sobic009G251100--Sobic010G096100 Sobic003G419600 Sobic003G419600 Sobic009G251100--Sobic003G419600 Sobic001G196000 Sobic001G196000 Sobic009G251100--Sobic001G196000 Sobic009G251100--Sobic001G073150 Sobic004G243800 Sobic004G243800 Sobic009G251100--Sobic004G243800 Sobic009G251100--Sobic001G437500 Sobic009G251100--Sobic009G063400 Sobic001G159800--Sobic010G090500 Sobic001G159800--Sobic001G437500 Sobic001G159800--Sobic009G061000 Sobic001G159800--Sobic009G206500 Sobic001G159800--Sobic009G073400 Sobic001G159800--Sobic003G017500 Sobic001G159800--Sobic001G196000 Sobic006G173200 Sobic006G173200 Sobic001G159800--Sobic006G173200 Sobic001G507200 Sobic001G507200 Sobic001G159800--Sobic001G507200 Sobic002G276600 Sobic002G276600 Sobic008G174900--Sobic002G276600 Sobic008G174900--Sobic001G437500 Sobic008G174900--Sobic004G243800 Sobic008G174900--Sobic006G267500 Sobic008G174900--Sobic010G090500 Sobic008G174900--Sobic009G026101 Sobic009G226900 Sobic009G226900 Sobic008G174900--Sobic009G226900 Sobic008G174900--Sobic010G096100 Sobic008G174900--Sobic009G206500
Octagon: transcription factors


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