Gene annotation
Transcriptome id Sobic.001G222400.6,Sobic.001G222400.8,Sobic.001G222400.7,Sobic.001G222400.5
Synonym Sb01g019560, NPGR2
Functional annotation tetratricopeptide repeat domain containing protein, expressed
UniProt A0A1B6QKA8
Pfam PF07719
Panther DB PTHR23083 PTHR23083:SF444
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G28600 : no pollen germination related 2
RAP-DB (Rice) LOC_Os10g33290.2,LOC_Os10g33290.1 : tetratricopeptide repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a006652
Brachypodium PNT67522 , KQJ97048 , KQJ97042 , KQJ97043 , KQJ97046 , KQJ97047 , KQJ97044 , KQJ97045
Barley HORVU1Hr1G040050.1 , HORVU1Hr1G040050.2 , HORVU1Hr1G040050.3 , HORVU1Hr1G040050.4 , HORVU1Hr1G040050.6
Wheat TraesCS1D02G148200 , TraesCS1B02G168800 , TraesCS1A02G151200
Populus -


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cDNA sequences
Sobic.001G222400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G138500 lectin protein kinase family protein, putative, expressed -
2 Sobic.003G053700 growth regulator related protein, putative, expressed -
3 Sobic.009G017500 beta-hexosaminidase precursor, putative, expressed K12373: hexosaminidase
4 Sobic.001G073150 - K15449: tRNA wybutosine-synthesizing protein 1
5 Sobic.006G177300 ATFUC1, putative, expressed K01206: alpha-L-fucosidase
6 Sobic.004G124100 EMB1303, putative, expressed -
7 Sobic.002G333100 transmembrane protein, putative, expressed -
8 Sobic.010G120300 tm-1GCR237 protein, putative, expressed -
9 Sobic.009G125900 expressed protein -
10 Sobic.006G248400 aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
11 Sobic.006G179700 Ser/Thr-rich protein T10 in DGCR region, putative, expressed -
12 Sobic.006G002201 - -
13 Sobic.008G103900 glycine-rich RNA-binding protein 7, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
14 Sobic.006G038200 receptor protein kinase, putative, expressed -
15 Sobic.010G067500 OsSCP32 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
16 Sobic.004G057100 tubulin-specific chaperone E, putative, expressed -
17 Sobic.004G133700 apoptosis inhibitor 5, putative, expressed -
18 Sobic.001G408800 hydrolase, alpha/beta fold family protein, putative, expressed -
19 Sobic.006G000600 expressed protein -
20 Sobic.001G486700 adenylosuccinate synthetase, chloroplast precursor, putative, expressed K01939: purA, adenylosuccinate synthase


Gene co-expression network
sample Sobic001G222400 Sobic001G222400 Sobic010G138500 Sobic010G138500 Sobic001G222400--Sobic010G138500 Sobic003G053700 Sobic003G053700 Sobic001G222400--Sobic003G053700 Sobic009G017500 Sobic009G017500 Sobic001G222400--Sobic009G017500 Sobic001G073150 Sobic001G073150 Sobic001G222400--Sobic001G073150 Sobic006G177300 Sobic006G177300 Sobic001G222400--Sobic006G177300 Sobic004G124100 Sobic004G124100 Sobic001G222400--Sobic004G124100 Sobic002G333100 Sobic002G333100 Sobic001G222400--Sobic002G333100 Sobic010G120300 Sobic010G120300 Sobic001G222400--Sobic010G120300 Sobic009G125900 Sobic009G125900 Sobic001G222400--Sobic009G125900 Sobic004G134100 Sobic004G134100 Sobic010G138500--Sobic004G134100 Sobic001G215900 Sobic001G215900 Sobic010G138500--Sobic001G215900 Sobic010G217100 Sobic010G217100 Sobic010G138500--Sobic010G217100 Sobic010G242900 Sobic010G242900 Sobic010G138500--Sobic010G242900 Sobic001G366800 Sobic001G366800 Sobic010G138500--Sobic001G366800 Sobic010G138500--Sobic001G222400 Sobic002G143000 Sobic002G143000 Sobic010G138500--Sobic002G143000 Sobic002G319200 Sobic002G319200 Sobic010G138500--Sobic002G319200 Sobic004G104800 Sobic004G104800 Sobic010G138500--Sobic004G104800 Sobic003G053700--Sobic009G125900 Sobic002G342500 Sobic002G342500 Sobic003G053700--Sobic002G342500 Sobic009G246700 Sobic009G246700 Sobic003G053700--Sobic009G246700 Sobic003G053700--Sobic001G222400 Sobic003G348800 Sobic003G348800 Sobic003G053700--Sobic003G348800 Sobic010G090500 Sobic010G090500 Sobic003G053700--Sobic010G090500 Sobic004G265600 Sobic004G265600 Sobic003G053700--Sobic004G265600 Sobic003G254700 Sobic003G254700 Sobic003G053700--Sobic003G254700 Sobic001G281900 Sobic001G281900 Sobic003G053700--Sobic001G281900 Sobic001G208600 Sobic001G208600 Sobic009G017500--Sobic001G208600 Sobic001G263900 Sobic001G263900 Sobic009G017500--Sobic001G263900 Sobic009G221900 Sobic009G221900 Sobic009G017500--Sobic009G221900 Sobic002G030800 Sobic002G030800 Sobic009G017500--Sobic002G030800 Sobic008G072600 Sobic008G072600 Sobic009G017500--Sobic008G072600 Sobic010G096100 Sobic010G096100 Sobic009G017500--Sobic010G096100 Sobic006G075000 Sobic006G075000 Sobic009G017500--Sobic006G075000 Sobic003G099166 Sobic003G099166 Sobic009G017500--Sobic003G099166 Sobic003G238600 Sobic003G238600 Sobic009G017500--Sobic003G238600 Sobic001G073150--Sobic010G120300 Sobic001G073150--Sobic010G090500 Sobic003G198500 Sobic003G198500 Sobic001G073150--Sobic003G198500 Sobic008G191500 Sobic008G191500 Sobic001G073150--Sobic008G191500 Sobic001G073150--Sobic010G096100 Sobic001G073150--Sobic009G125900 Sobic009G251100 Sobic009G251100 Sobic001G073150--Sobic009G251100 Sobic001G159800 Sobic001G159800 Sobic001G073150--Sobic001G159800 Sobic008G174900 Sobic008G174900 Sobic001G073150--Sobic008G174900 Sobic006G000600 Sobic006G000600 Sobic006G177300--Sobic006G000600 Sobic001G057200 Sobic001G057200 Sobic006G177300--Sobic001G057200 Sobic006G177300--Sobic001G366800 Sobic001G242800 Sobic001G242800 Sobic006G177300--Sobic001G242800 Sobic006G177300--Sobic002G143000 Sobic002G259400 Sobic002G259400 Sobic006G177300--Sobic002G259400 Sobic006G179700 Sobic006G179700 Sobic006G177300--Sobic006G179700 Sobic003G376400 Sobic003G376400 Sobic006G177300--Sobic003G376400 Sobic001G322000 Sobic001G322000 Sobic006G177300--Sobic001G322000 Sobic004G291400 Sobic004G291400 Sobic004G124100--Sobic004G291400 Sobic001G468600 Sobic001G468600 Sobic004G124100--Sobic001G468600 Sobic006G002201 Sobic006G002201 Sobic004G124100--Sobic006G002201 Sobic004G248900 Sobic004G248900 Sobic004G124100--Sobic004G248900 Sobic006G010400 Sobic006G010400 Sobic004G124100--Sobic006G010400 Sobic006G157000 Sobic006G157000 Sobic004G124100--Sobic006G157000 Sobic008G118600 Sobic008G118600 Sobic004G124100--Sobic008G118600 Sobic005G105500 Sobic005G105500 Sobic004G124100--Sobic005G105500 Sobic008G103800 Sobic008G103800 Sobic004G124100--Sobic008G103800 Sobic003G420900 Sobic003G420900 Sobic002G333100--Sobic003G420900 Sobic010G108900 Sobic010G108900 Sobic002G333100--Sobic010G108900 Sobic006G168400 Sobic006G168400 Sobic002G333100--Sobic006G168400 Sobic002G244500 Sobic002G244500 Sobic002G333100--Sobic002G244500 Sobic001G376700 Sobic001G376700 Sobic002G333100--Sobic001G376700 Sobic004G296800 Sobic004G296800 Sobic002G333100--Sobic004G296800 Sobic003G265500 Sobic003G265500 Sobic002G333100--Sobic003G265500 Sobic009G124000 Sobic009G124000 Sobic002G333100--Sobic009G124000 Sobic001G463500 Sobic001G463500 Sobic002G333100--Sobic001G463500 Sobic010G120300--Sobic001G073150 Sobic010G120300--Sobic010G090500 Sobic010G120300--Sobic009G251100 Sobic010G120300--Sobic001G159800 Sobic010G120300--Sobic008G174900 Sobic001G131700 Sobic001G131700 Sobic010G120300--Sobic001G131700 Sobic003G267000 Sobic003G267000 Sobic010G120300--Sobic003G267000 Sobic010G120300--Sobic009G125900 Sobic001G021500 Sobic001G021500 Sobic010G120300--Sobic001G021500 Sobic009G063400 Sobic009G063400 Sobic009G125900--Sobic009G063400 Sobic009G026101 Sobic009G026101 Sobic009G125900--Sobic009G026101 Sobic002G075500 Sobic002G075500 Sobic009G125900--Sobic002G075500 Sobic002G118700 Sobic002G118700 Sobic009G125900--Sobic002G118700 Sobic009G125900--Sobic010G090500 Sobic009G125900--Sobic004G265600 Sobic009G125900--Sobic010G096100 Sobic004G051300 Sobic004G051300 Sobic009G125900--Sobic004G051300 Sobic009G125900--Sobic003G254700
Octagon: transcription factors


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