Gene annotation
Transcriptome id Sobic.002G333100.1
Synonym Sb02g035910
Functional annotation transmembrane protein, putative, expressed
UniProt C5XAW6
Pfam PF01940
Panther DB PTHR13353 PTHR13353:SF8
NCBI CDD KOG4491; Predicted membrane protein
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT5G19930 : Protein of unknown function DUF92, transmembrane
RAP-DB (Rice) LOC_Os01g32280.1 : transmembrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a023198 , Zm00025a014871
Brachypodium KQJ86866
Barley HORVU5Hr1G029490.4 , HORVU5Hr1G029490.1 , HORVU5Hr1G029490.3 , HORVU5Hr1G029490.2 , HORVU5Hr1G029310.7 , HORVU5Hr1G029310.1
Wheat TraesCS5A02G113000 , TraesCS5D02G117500 , TraesCSU02G139600
Populus -


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cDNA sequences
Sobic.002G333100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G420900 S-formylglutathione hydrolase, putative, expressed K01070: frmB, ESD, S-formylglutathione hydrolase
2 Sobic.010G108900 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
3 Sobic.006G168400 ethylene-responsive element-binding protein, putative, expressed -
4 Sobic.002G244500 ATP phosphoribosyltransferase, putative, expressed K00765: ATP phosphoribosyltransferase
5 Sobic.001G376700 blue-light photoreceptor PHR2, putative, expressed -
6 Sobic.004G296800 3-isopropylmalate dehydratase small subunit 2, putative, expressed K01704: leuD, 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit
7 Sobic.003G265500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
8 Sobic.009G124000 mesophyll envelope protein(PubMedID : 26976818)@expressed protein -
9 Sobic.001G463500 FAD-linked sulfhydryl oxidase ALR, putative, expressed K17783: ERV1, GFER, mitochondrial FAD-linked sulfhydryl oxidase
10 Sobic.009G207100 enoyl-CoA hydratase/isomerase family protein, putative, expressed -
11 Sobic.001G222400 tetratricopeptide repeat domain containing protein, expressed -
12 Sobic.008G103900 glycine-rich RNA-binding protein 7, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
13 Sobic.007G171950 - -
14 Sobic.002G330500 hydrolase, NUDIX family, domain containing protein, expressed K01823: idi, isopentenyl-diphosphate Delta-isomerase
15 Sobic.008G118600 riboflavin synthase alpha chain, putative, expressed K00793: ribE, riboflavin synthase
16 Sobic.001G486700 adenylosuccinate synthetase, chloroplast precursor, putative, expressed K01939: purA, adenylosuccinate synthase
17 Sobic.004G265900 class I glutamine amidotransferase, putative, expressed K01956: carA, carbamoyl-phosphate synthase small subunit
18 Sobic.004G124100 EMB1303, putative, expressed -
19 Sobic.001G543700 palmitoyl-protein thioesterase 1 precursor, putative, expressed K01074: palmitoyl-protein thioesterase
20 Sobic.002G133100 prephenate dehydratase domain containing protein, expressed K05359: ADT, arogenate/prephenate dehydratase


Gene co-expression network
sample Sobic002G333100 Sobic002G333100 Sobic003G420900 Sobic003G420900 Sobic002G333100--Sobic003G420900 Sobic010G108900 Sobic010G108900 Sobic002G333100--Sobic010G108900 Sobic006G168400 Sobic006G168400 Sobic002G333100--Sobic006G168400 Sobic002G244500 Sobic002G244500 Sobic002G333100--Sobic002G244500 Sobic001G376700 Sobic001G376700 Sobic002G333100--Sobic001G376700 Sobic004G296800 Sobic004G296800 Sobic002G333100--Sobic004G296800 Sobic003G265500 Sobic003G265500 Sobic002G333100--Sobic003G265500 Sobic009G124000 Sobic009G124000 Sobic002G333100--Sobic009G124000 Sobic001G463500 Sobic001G463500 Sobic002G333100--Sobic001G463500 Sobic003G420900--Sobic001G376700 Sobic003G420900--Sobic004G296800 Sobic003G165800 Sobic003G165800 Sobic003G420900--Sobic003G165800 Sobic009G231100 Sobic009G231100 Sobic003G420900--Sobic009G231100 Sobic003G420900--Sobic002G333100 Sobic004G275600 Sobic004G275600 Sobic003G420900--Sobic004G275600 Sobic010G134500 Sobic010G134500 Sobic003G420900--Sobic010G134500 Sobic003G261200 Sobic003G261200 Sobic003G420900--Sobic003G261200 Sobic001G543700 Sobic001G543700 Sobic003G420900--Sobic001G543700 Sobic001G380500 Sobic001G380500 Sobic010G108900--Sobic001G380500 Sobic001G218800 Sobic001G218800 Sobic010G108900--Sobic001G218800 Sobic010G108900--Sobic006G168400 Sobic003G004700 Sobic003G004700 Sobic010G108900--Sobic003G004700 Sobic006G183000 Sobic006G183000 Sobic010G108900--Sobic006G183000 Sobic001G469200 Sobic001G469200 Sobic010G108900--Sobic001G469200 Sobic002G262000 Sobic002G262000 Sobic010G108900--Sobic002G262000 Sobic009G108500 Sobic009G108500 Sobic010G108900--Sobic009G108500 Sobic006G109700 Sobic006G109700 Sobic010G108900--Sobic006G109700 Sobic006G168400--Sobic010G108900 Sobic006G168400--Sobic001G380500 Sobic006G168400--Sobic002G262000 Sobic006G168400--Sobic002G333100 Sobic006G168400--Sobic003G004700 Sobic006G168400--Sobic006G183000 Sobic006G168400--Sobic001G463500 Sobic006G168400--Sobic006G109700 Sobic006G168400--Sobic001G218800 Sobic002G244500--Sobic009G124000 Sobic006G275800 Sobic006G275800 Sobic002G244500--Sobic006G275800 Sobic008G067100 Sobic008G067100 Sobic002G244500--Sobic008G067100 Sobic010G221600 Sobic010G221600 Sobic002G244500--Sobic010G221600 Sobic002G244500--Sobic003G265500 Sobic002G244500--Sobic004G275600 Sobic004G144400 Sobic004G144400 Sobic002G244500--Sobic004G144400 Sobic002G244500--Sobic003G420900 Sobic002G244500--Sobic002G333100 Sobic001G376700--Sobic004G296800 Sobic006G084500 Sobic006G084500 Sobic001G376700--Sobic006G084500 Sobic004G044200 Sobic004G044200 Sobic001G376700--Sobic004G044200 Sobic001G376700--Sobic009G124000 Sobic001G376700--Sobic003G420900 Sobic003G292300 Sobic003G292300 Sobic001G376700--Sobic003G292300 Sobic009G180800 Sobic009G180800 Sobic001G376700--Sobic009G180800 Sobic008G123600 Sobic008G123600 Sobic001G376700--Sobic008G123600 Sobic009G001500 Sobic009G001500 Sobic001G376700--Sobic009G001500 Sobic004G296800--Sobic001G376700 Sobic004G296800--Sobic001G543700 Sobic004G296800--Sobic004G044200 Sobic004G296800--Sobic003G420900 Sobic002G207900 Sobic002G207900 Sobic004G296800--Sobic002G207900 Sobic007G026200 Sobic007G026200 Sobic004G296800--Sobic007G026200 Sobic004G296800--Sobic008G123600 Sobic001G541300 Sobic001G541300 Sobic004G296800--Sobic001G541300 Sobic005G218201 Sobic005G218201 Sobic004G296800--Sobic005G218201 Sobic003G225100 Sobic003G225100 Sobic003G265500--Sobic003G225100 Sobic005G184300 Sobic005G184300 Sobic003G265500--Sobic005G184300 Sobic003G085000 Sobic003G085000 Sobic003G265500--Sobic003G085000 Sobic001G424300 Sobic001G424300 Sobic003G265500--Sobic001G424300 Sobic003G265500--Sobic010G221600 Sobic004G307400 Sobic004G307400 Sobic003G265500--Sobic004G307400 Sobic004G065300 Sobic004G065300 Sobic003G265500--Sobic004G065300 Sobic002G353300 Sobic002G353300 Sobic003G265500--Sobic002G353300 Sobic001G104800 Sobic001G104800 Sobic003G265500--Sobic001G104800 Sobic001G486700 Sobic001G486700 Sobic009G124000--Sobic001G486700 Sobic008G183700 Sobic008G183700 Sobic009G124000--Sobic008G183700 Sobic009G124000--Sobic001G376700 Sobic009G124000--Sobic004G275600 Sobic001G401700 Sobic001G401700 Sobic009G124000--Sobic001G401700 Sobic007G208300 Sobic007G208300 Sobic009G124000--Sobic007G208300 Sobic009G124000--Sobic003G292300 Sobic009G124000--Sobic002G244500 Sobic009G124000--Sobic010G221600 Sobic001G463500--Sobic004G296800 Sobic008G135701 Sobic008G135701 Sobic001G463500--Sobic008G135701 Sobic002G330500 Sobic002G330500 Sobic001G463500--Sobic002G330500 Sobic001G008700 Sobic001G008700 Sobic001G463500--Sobic001G008700 Sobic001G463500--Sobic003G420900 Sobic001G463500--Sobic001G543700 Sobic001G011300 Sobic001G011300 Sobic001G463500--Sobic001G011300 Sobic002G253100 Sobic002G253100 Sobic001G463500--Sobic002G253100 Sobic001G463500--Sobic002G333100
Octagon: transcription factors


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