Gene annotation
Transcriptome id Sobic.002G330500.1
Synonym IDI2, IPIAT1, IPP2, Sb02g035700
Functional annotation hydrolase, NUDIX family, domain containing protein, expressed
UniProt C5XAU4
Pfam PF00293
Panther DB PTHR10885 PTHR10885:SF4
NCBI CDD KOG0142; Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase
KEGG Orthology K01823; idi, isopentenyl-diphosphate Delta-isomerase
Gene Ontology GO:0016787; hydrolase activity GO:0008299isoprenoid biosynthetic process GO:0004452isopentenyl-diphosphate delta-isomerase activity


Orthologs (automatic annotation)
TAIR AT3G02780 : isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2
RAP-DB (Rice) LOC_Os07g36190.1 : hydrolase, NUDIX family, domain containing protein, expressed
MaizeGDB (Corn) Zm00025a037430 , Zm00025a048323
Brachypodium KQK15857
Barley HORVU1Hr1G064860.3 , HORVU1Hr1G064860.2 , HORVU1Hr1G064860.1 , HORVU1Hr1G064860.7 , HORVU1Hr1G064860.6 , HORVU1Hr1G064860.5 , HORVU1Hr1G064860.4
Wheat TraesCS2B02G239200 , TraesCS2B02G239200 , TraesCS1A02G259000 , TraesCS2D02G220000 , TraesCS1D02G258900 , TraesCS1B02G269500 , TraesCS2A02G214200 , TraesCS2A02G214200
Populus -


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cDNA sequences
Sobic.002G330500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G463500 FAD-linked sulfhydryl oxidase ALR, putative, expressed K17783: ERV1, GFER, mitochondrial FAD-linked sulfhydryl oxidase
2 Sobic.002G333100 transmembrane protein, putative, expressed -
3 Sobic.007G171950 - -
4 Sobic.001G471600 acetyltransferase, GNAT family, putative, expressed -
5 Sobic.003G218801 - -
6 Sobic.002G133100 prephenate dehydratase domain containing protein, expressed K05359: ADT, arogenate/prephenate dehydratase
7 Sobic.001G296400 palmitoyl-protein thioesterase 1 precursor, putative, expressed K01074: palmitoyl-protein thioesterase
8 Sobic.001G088800 N2, N2-dimethylguanosine tRNA methyltransferase, putative, expressed -
9 Sobic.004G260400 expressed protein K07018: uncharacterized protein
10 Sobic.009G070100 expressed protein -
11 Sobic.001G306700 PPR repeat domain containing protein, putative, expressed -
12 Sobic.002G253100 30S ribosomal protein S16, putative, expressed K02959: RP-S16, MRPS16, small subunit ribosomal protein S16
13 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -
14 Sobic.007G002900 C3-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C3 subfamily conserved sequence, expressed K10523: speckle-type POZ protein
15 Sobic.006G216000 DAG protein, chloroplast precursor, putative, expressed -
16 Sobic.004G175600 tetratricopeptide repeat domain containing protein, expressed -
17 Sobic.001G335201 - -
18 Sobic.001G309100 zinc knuckle domain containing protein, expressed K09250: cellular nucleic acid-binding protein
19 Sobic.009G001100 expressed protein -
20 Sobic.007G206100 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial


Gene co-expression network
sample Sobic002G330500 Sobic002G330500 Sobic001G463500 Sobic001G463500 Sobic002G330500--Sobic001G463500 Sobic002G333100 Sobic002G333100 Sobic002G330500--Sobic002G333100 Sobic007G171950 Sobic007G171950 Sobic002G330500--Sobic007G171950 Sobic001G471600 Sobic001G471600 Sobic002G330500--Sobic001G471600 Sobic003G218801 Sobic003G218801 Sobic002G330500--Sobic003G218801 Sobic002G133100 Sobic002G133100 Sobic002G330500--Sobic002G133100 Sobic001G296400 Sobic001G296400 Sobic002G330500--Sobic001G296400 Sobic001G088800 Sobic001G088800 Sobic002G330500--Sobic001G088800 Sobic004G260400 Sobic004G260400 Sobic002G330500--Sobic004G260400 Sobic004G296800 Sobic004G296800 Sobic001G463500--Sobic004G296800 Sobic008G135701 Sobic008G135701 Sobic001G463500--Sobic008G135701 Sobic001G463500--Sobic002G330500 Sobic001G008700 Sobic001G008700 Sobic001G463500--Sobic001G008700 Sobic003G420900 Sobic003G420900 Sobic001G463500--Sobic003G420900 Sobic001G543700 Sobic001G543700 Sobic001G463500--Sobic001G543700 Sobic001G011300 Sobic001G011300 Sobic001G463500--Sobic001G011300 Sobic002G253100 Sobic002G253100 Sobic001G463500--Sobic002G253100 Sobic001G463500--Sobic002G333100 Sobic002G333100--Sobic003G420900 Sobic010G108900 Sobic010G108900 Sobic002G333100--Sobic010G108900 Sobic006G168400 Sobic006G168400 Sobic002G333100--Sobic006G168400 Sobic002G244500 Sobic002G244500 Sobic002G333100--Sobic002G244500 Sobic001G376700 Sobic001G376700 Sobic002G333100--Sobic001G376700 Sobic002G333100--Sobic004G296800 Sobic003G265500 Sobic003G265500 Sobic002G333100--Sobic003G265500 Sobic009G124000 Sobic009G124000 Sobic002G333100--Sobic009G124000 Sobic002G333100--Sobic001G463500 Sobic008G067100 Sobic008G067100 Sobic007G171950--Sobic008G067100 Sobic001G096300 Sobic001G096300 Sobic007G171950--Sobic001G096300 Sobic007G095500 Sobic007G095500 Sobic007G171950--Sobic007G095500 Sobic002G122600 Sobic002G122600 Sobic007G171950--Sobic002G122600 Sobic007G171950--Sobic001G296400 Sobic007G171950--Sobic010G108900 Sobic009G207100 Sobic009G207100 Sobic007G171950--Sobic009G207100 Sobic001G263000 Sobic001G263000 Sobic007G171950--Sobic001G263000 Sobic007G171950--Sobic003G265500 Sobic006G216000 Sobic006G216000 Sobic001G471600--Sobic006G216000 Sobic007G172600 Sobic007G172600 Sobic001G471600--Sobic007G172600 Sobic001G471600--Sobic002G253100 Sobic007G119900 Sobic007G119900 Sobic001G471600--Sobic007G119900 Sobic004G133700 Sobic004G133700 Sobic001G471600--Sobic004G133700 Sobic008G125100 Sobic008G125100 Sobic001G471600--Sobic008G125100 Sobic001G152000 Sobic001G152000 Sobic001G471600--Sobic001G152000 Sobic010G055800 Sobic010G055800 Sobic001G471600--Sobic010G055800 Sobic009G056300 Sobic009G056300 Sobic001G471600--Sobic009G056300 Sobic001G063800 Sobic001G063800 Sobic003G218801--Sobic001G063800 Sobic007G206100 Sobic007G206100 Sobic003G218801--Sobic007G206100 Sobic008G011300 Sobic008G011300 Sobic003G218801--Sobic008G011300 Sobic001G250700 Sobic001G250700 Sobic003G218801--Sobic001G250700 Sobic009G156100 Sobic009G156100 Sobic003G218801--Sobic009G156100 Sobic005G025300 Sobic005G025300 Sobic003G218801--Sobic005G025300 Sobic004G175600 Sobic004G175600 Sobic003G218801--Sobic004G175600 Sobic003G218801--Sobic010G055800 Sobic001G373400 Sobic001G373400 Sobic003G218801--Sobic001G373400 Sobic002G133100--Sobic009G207100 Sobic008G064601 Sobic008G064601 Sobic002G133100--Sobic008G064601 Sobic002G133100--Sobic007G171950 Sobic001G202400 Sobic001G202400 Sobic002G133100--Sobic001G202400 Sobic008G173000 Sobic008G173000 Sobic002G133100--Sobic008G173000 Sobic003G245900 Sobic003G245900 Sobic002G133100--Sobic003G245900 Sobic003G052600 Sobic003G052600 Sobic002G133100--Sobic003G052600 Sobic002G133100--Sobic002G333100 Sobic002G328100 Sobic002G328100 Sobic002G133100--Sobic002G328100 Sobic003G071600 Sobic003G071600 Sobic001G296400--Sobic003G071600 Sobic001G296400--Sobic004G175600 Sobic004G208600 Sobic004G208600 Sobic001G296400--Sobic004G208600 Sobic001G296400--Sobic006G216000 Sobic001G296400--Sobic001G063800 Sobic001G296400--Sobic003G420900 Sobic001G296400--Sobic007G171950 Sobic001G296400--Sobic008G173000 Sobic001G384800 Sobic001G384800 Sobic001G296400--Sobic001G384800 Sobic001G088800--Sobic002G253100 Sobic008G039000 Sobic008G039000 Sobic001G088800--Sobic008G039000 Sobic001G088800--Sobic006G216000 Sobic001G485600 Sobic001G485600 Sobic001G088800--Sobic001G485600 Sobic001G088800--Sobic002G330500 Sobic008G056900 Sobic008G056900 Sobic001G088800--Sobic008G056900 Sobic009G096100 Sobic009G096100 Sobic001G088800--Sobic009G096100 Sobic003G368800 Sobic003G368800 Sobic001G088800--Sobic003G368800 Sobic002G407800 Sobic002G407800 Sobic001G088800--Sobic002G407800 Sobic001G038100 Sobic001G038100 Sobic004G260400--Sobic001G038100 Sobic001G009800 Sobic001G009800 Sobic004G260400--Sobic001G009800 Sobic006G183000 Sobic006G183000 Sobic004G260400--Sobic006G183000 Sobic004G186000 Sobic004G186000 Sobic004G260400--Sobic004G186000 Sobic001G309100 Sobic001G309100 Sobic004G260400--Sobic001G309100 Sobic001G544100 Sobic001G544100 Sobic004G260400--Sobic001G544100 Sobic003G405700 Sobic003G405700 Sobic004G260400--Sobic003G405700 Sobic003G045400 Sobic003G045400 Sobic004G260400--Sobic003G045400 Sobic002G204000 Sobic002G204000 Sobic004G260400--Sobic002G204000
Octagon: transcription factors


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