Gene annotation
Transcriptome id Sobic.002G253100.1
Synonym Sb02g028880
Functional annotation 30S ribosomal protein S16, putative, expressed
UniProt C5X4K2
Pfam PF00886
Panther DB PTHR12919 PTHR12919:SF20
NCBI CDD KOG3419; Mitochondrial/chloroplast ribosomal protein S16
KEGG Orthology K02959; RP-S16, MRPS16, small subunit ribosomal protein S16
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G56940 : Ribosomal protein S16 family protein
RAP-DB (Rice) LOC_Os09g32274.1 : 30S ribosomal protein S16, putative, expressed
MaizeGDB (Corn) Zm00025a047508
Brachypodium KQJ90850
Barley HORVU5Hr1G074860.2 , HORVU5Hr1G074860.1 , HORVU5Hr1G074920.12 , HORVU5Hr1G074920.11 , HORVU5Hr1G074920.10
Wheat TraesCS5A02G276000 , TraesCS5D02G283300 , TraesCS5B02G275300
Populus -


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cDNA sequences
Sobic.002G253100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G216000 DAG protein, chloroplast precursor, putative, expressed -
2 Sobic.007G119900 signal recognition particle receptor subunit beta, putative, expressed K12272: SRPRB, signal recognition particle receptor subunit beta
3 Sobic.005G132700 acetyltransferase, GNAT family, putative, expressed K00670: NAA30, N-alpha-acetyltransferase 30
4 Sobic.001G152000 elongation factor Tu family protein, putative, expressed K14536: ribosome assembly protein 1
5 Sobic.002G402500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
6 Sobic.006G020900 phosphoglycerate mutase, putative, expressed -
7 Sobic.003G119400 PUR ALPHA-1, putative, expressed -
8 Sobic.001G404200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17790: mitochondrial import inner membrane translocase subunit TIM22
9 Sobic.004G248900 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
10 Sobic.001G471600 acetyltransferase, GNAT family, putative, expressed -
11 Sobic.001G392800 NADH dehydrogenase 1 alpha subcomplex subunit 5, putative, expressed K03949: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 5
12 Sobic.003G118400 expressed protein -
13 Sobic.003G113400 ribosomal protein L3, putative, expressed K02906: RP-L3, MRPL3, large subunit ribosomal protein L3
14 Sobic.002G055100 expressed protein -
15 Sobic.008G125000 AP-3 complex subunit delta, putative, expressed K12396: AP-3 complex subunit delta
16 Sobic.001G335201 - -
17 Sobic.009G193850 - -
18 Sobic.004G249300 proteasome subunit, putative, expressed K15030: translation initiation factor 3 subunit M
19 Sobic.001G451901 - -
20 Sobic.001G463500 FAD-linked sulfhydryl oxidase ALR, putative, expressed K17783: ERV1, GFER, mitochondrial FAD-linked sulfhydryl oxidase


Gene co-expression network
sample Sobic002G253100 Sobic002G253100 Sobic006G216000 Sobic006G216000 Sobic002G253100--Sobic006G216000 Sobic007G119900 Sobic007G119900 Sobic002G253100--Sobic007G119900 Sobic005G132700 Sobic005G132700 Sobic002G253100--Sobic005G132700 Sobic001G152000 Sobic001G152000 Sobic002G253100--Sobic001G152000 Sobic002G402500 Sobic002G402500 Sobic002G253100--Sobic002G402500 Sobic006G020900 Sobic006G020900 Sobic002G253100--Sobic006G020900 Sobic003G119400 Sobic003G119400 Sobic002G253100--Sobic003G119400 Sobic001G404200 Sobic001G404200 Sobic002G253100--Sobic001G404200 Sobic004G248900 Sobic004G248900 Sobic002G253100--Sobic004G248900 Sobic004G291400 Sobic004G291400 Sobic006G216000--Sobic004G291400 Sobic006G216000--Sobic002G253100 Sobic006G216000--Sobic003G119400 Sobic006G252100 Sobic006G252100 Sobic006G216000--Sobic006G252100 Sobic002G083400 Sobic002G083400 Sobic006G216000--Sobic002G083400 Sobic006G216000--Sobic001G152000 Sobic001G296400 Sobic001G296400 Sobic006G216000--Sobic001G296400 Sobic001G471600 Sobic001G471600 Sobic006G216000--Sobic001G471600 Sobic001G335201 Sobic001G335201 Sobic006G216000--Sobic001G335201 Sobic005G025800 Sobic005G025800 Sobic007G119900--Sobic005G025800 Sobic003G083900 Sobic003G083900 Sobic007G119900--Sobic003G083900 Sobic004G133700 Sobic004G133700 Sobic007G119900--Sobic004G133700 Sobic007G119900--Sobic001G152000 Sobic001G226000 Sobic001G226000 Sobic007G119900--Sobic001G226000 Sobic007G119900--Sobic002G253100 Sobic009G001100 Sobic009G001100 Sobic007G119900--Sobic009G001100 Sobic001G291800 Sobic001G291800 Sobic007G119900--Sobic001G291800 Sobic001G168900 Sobic001G168900 Sobic007G119900--Sobic001G168900 Sobic005G132700--Sobic002G402500 Sobic005G132700--Sobic002G253100 Sobic010G194200 Sobic010G194200 Sobic005G132700--Sobic010G194200 Sobic001G060300 Sobic001G060300 Sobic005G132700--Sobic001G060300 Sobic001G451901 Sobic001G451901 Sobic005G132700--Sobic001G451901 Sobic001G214900 Sobic001G214900 Sobic005G132700--Sobic001G214900 Sobic001G473400 Sobic001G473400 Sobic005G132700--Sobic001G473400 Sobic010G258000 Sobic010G258000 Sobic005G132700--Sobic010G258000 Sobic003G326900 Sobic003G326900 Sobic005G132700--Sobic003G326900 Sobic002G268400 Sobic002G268400 Sobic001G152000--Sobic002G268400 Sobic004G074300 Sobic004G074300 Sobic001G152000--Sobic004G074300 Sobic009G033900 Sobic009G033900 Sobic001G152000--Sobic009G033900 Sobic001G294900 Sobic001G294900 Sobic001G152000--Sobic001G294900 Sobic004G019600 Sobic004G019600 Sobic001G152000--Sobic004G019600 Sobic001G152000--Sobic006G252100 Sobic001G009800 Sobic001G009800 Sobic001G152000--Sobic001G009800 Sobic003G405700 Sobic003G405700 Sobic001G152000--Sobic003G405700 Sobic006G183000 Sobic006G183000 Sobic001G152000--Sobic006G183000 Sobic002G402500--Sobic003G326900 Sobic003G205400 Sobic003G205400 Sobic002G402500--Sobic003G205400 Sobic003G388900 Sobic003G388900 Sobic002G402500--Sobic003G388900 Sobic002G402500--Sobic001G060300 Sobic002G402500--Sobic001G214900 Sobic001G522000 Sobic001G522000 Sobic002G402500--Sobic001G522000 Sobic006G041100 Sobic006G041100 Sobic002G402500--Sobic006G041100 Sobic002G367800 Sobic002G367800 Sobic002G402500--Sobic002G367800 Sobic003G113400 Sobic003G113400 Sobic002G402500--Sobic003G113400 Sobic006G020900--Sobic001G473400 Sobic002G410700 Sobic002G410700 Sobic006G020900--Sobic002G410700 Sobic003G388700 Sobic003G388700 Sobic006G020900--Sobic003G388700 Sobic005G105500 Sobic005G105500 Sobic006G020900--Sobic005G105500 Sobic006G020900--Sobic004G291400 Sobic001G304000 Sobic001G304000 Sobic006G020900--Sobic001G304000 Sobic009G256000 Sobic009G256000 Sobic006G020900--Sobic009G256000 Sobic003G392600 Sobic003G392600 Sobic006G020900--Sobic003G392600 Sobic009G240700 Sobic009G240700 Sobic006G020900--Sobic009G240700 Sobic003G119400--Sobic004G074300 Sobic001G041200 Sobic001G041200 Sobic003G119400--Sobic001G041200 Sobic002G259400 Sobic002G259400 Sobic003G119400--Sobic002G259400 Sobic010G146600 Sobic010G146600 Sobic003G119400--Sobic010G146600 Sobic003G119400--Sobic006G216000 Sobic006G272200 Sobic006G272200 Sobic003G119400--Sobic006G272200 Sobic006G242300 Sobic006G242300 Sobic003G119400--Sobic006G242300 Sobic003G119400--Sobic002G268400 Sobic002G306400 Sobic002G306400 Sobic003G119400--Sobic002G306400 Sobic006G094600 Sobic006G094600 Sobic001G404200--Sobic006G094600 Sobic001G332300 Sobic001G332300 Sobic001G404200--Sobic001G332300 Sobic007G118000 Sobic007G118000 Sobic001G404200--Sobic007G118000 Sobic003G374000 Sobic003G374000 Sobic001G404200--Sobic003G374000 Sobic005G184200 Sobic005G184200 Sobic001G404200--Sobic005G184200 Sobic008G110500 Sobic008G110500 Sobic001G404200--Sobic008G110500 Sobic007G014900 Sobic007G014900 Sobic001G404200--Sobic007G014900 Sobic003G148900 Sobic003G148900 Sobic001G404200--Sobic003G148900 Sobic008G145100 Sobic008G145100 Sobic001G404200--Sobic008G145100 Sobic004G248900--Sobic005G105500 Sobic005G191600 Sobic005G191600 Sobic004G248900--Sobic005G191600 Sobic001G129400 Sobic001G129400 Sobic004G248900--Sobic001G129400 Sobic007G143000 Sobic007G143000 Sobic004G248900--Sobic007G143000 Sobic004G248900--Sobic001G060300 Sobic010G013900 Sobic010G013900 Sobic004G248900--Sobic010G013900 Sobic001G117400 Sobic001G117400 Sobic004G248900--Sobic001G117400 Sobic004G248900--Sobic003G326900 Sobic001G404100 Sobic001G404100 Sobic004G248900--Sobic001G404100
Octagon: transcription factors


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