Gene annotation
Transcriptome id Sobic.001G088800.1
Synonym Sb01g008010
Functional annotation N2, N2-dimethylguanosine tRNA methyltransferase, putative, expressed
UniProt C5X141
Pfam PF10237
Panther DB PTHR13200 PTHR13200:SF0
NCBI CDD KOG3350; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology GO:0008168; methyltransferase activity


Orthologs (automatic annotation)
TAIR AT3G58470 : nucleic acid binding;methyltransferases
RAP-DB (Rice) LOC_Os03g53890.1 : N2, N2-dimethylguanosine tRNA methyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a008160
Brachypodium KQK13196 , KQK13195
Barley HORVU3Hr1G016440.2 , HORVU3Hr1G016440.3 , HORVU3Hr1G016440.1 , HORVU5Hr1G095190.2 , HORVU5Hr1G095190.1 , HORVU5Hr1G095190.6
Wheat TraesCS5A02G389300 , TraesCS5D02G399300 , TraesCS5B02G394500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G253100 30S ribosomal protein S16, putative, expressed K02959: RP-S16, MRPS16, small subunit ribosomal protein S16
2 Sobic.008G039000 expressed protein -
3 Sobic.006G216000 DAG protein, chloroplast precursor, putative, expressed -
4 Sobic.001G485600 DAG protein, chloroplast precursor, putative, expressed -
5 Sobic.002G330500 hydrolase, NUDIX family, domain containing protein, expressed K01823: idi, isopentenyl-diphosphate Delta-isomerase
6 Sobic.008G056900 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
7 Sobic.009G096100 endoribonuclease Dicer, putative, expressed -
8 Sobic.003G368800 expressed protein -
9 Sobic.002G407800 IPP transferase, putative, expressed K00791: miaA, tRNA dimethylallyltransferase
10 Sobic.002G344500 pentatricopeptide, putative, expressed K18213: proteinaceous RNase P
11 Sobic.003G142700 expressed protein -
12 Sobic.008G081600 expressed protein -
13 Sobic.005G025300 dehydrogenase-phosphopantetheinyltransferase, putative, expressed K06133: LYS5, 4'-phosphopantetheinyl transferase
14 Sobic.001G254400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized oxidoreductase, putative, expressed -
15 Sobic.001G471600 acetyltransferase, GNAT family, putative, expressed -
16 Sobic.001G463500 FAD-linked sulfhydryl oxidase ALR, putative, expressed K17783: ERV1, GFER, mitochondrial FAD-linked sulfhydryl oxidase
17 Sobic.001G127100 alkaline phytoceramidase, putative, expressed K04711: ACER3, dihydroceramidase
18 Sobic.004G309500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.002G328100 TKL_IRAK_DUF26-lc.18 - DUF26 kinases have homology to DUF26 containing loci, expressed -
20 Sobic.002G133100 prephenate dehydratase domain containing protein, expressed K05359: ADT, arogenate/prephenate dehydratase


Gene co-expression network
sample Sobic001G088800 Sobic001G088800 Sobic002G253100 Sobic002G253100 Sobic001G088800--Sobic002G253100 Sobic008G039000 Sobic008G039000 Sobic001G088800--Sobic008G039000 Sobic006G216000 Sobic006G216000 Sobic001G088800--Sobic006G216000 Sobic001G485600 Sobic001G485600 Sobic001G088800--Sobic001G485600 Sobic002G330500 Sobic002G330500 Sobic001G088800--Sobic002G330500 Sobic008G056900 Sobic008G056900 Sobic001G088800--Sobic008G056900 Sobic009G096100 Sobic009G096100 Sobic001G088800--Sobic009G096100 Sobic003G368800 Sobic003G368800 Sobic001G088800--Sobic003G368800 Sobic002G407800 Sobic002G407800 Sobic001G088800--Sobic002G407800 Sobic002G253100--Sobic006G216000 Sobic007G119900 Sobic007G119900 Sobic002G253100--Sobic007G119900 Sobic005G132700 Sobic005G132700 Sobic002G253100--Sobic005G132700 Sobic001G152000 Sobic001G152000 Sobic002G253100--Sobic001G152000 Sobic002G402500 Sobic002G402500 Sobic002G253100--Sobic002G402500 Sobic006G020900 Sobic006G020900 Sobic002G253100--Sobic006G020900 Sobic003G119400 Sobic003G119400 Sobic002G253100--Sobic003G119400 Sobic001G404200 Sobic001G404200 Sobic002G253100--Sobic001G404200 Sobic004G248900 Sobic004G248900 Sobic002G253100--Sobic004G248900 Sobic001G052100 Sobic001G052100 Sobic008G039000--Sobic001G052100 Sobic003G113400 Sobic003G113400 Sobic008G039000--Sobic003G113400 Sobic009G227100 Sobic009G227100 Sobic008G039000--Sobic009G227100 Sobic007G030600 Sobic007G030600 Sobic008G039000--Sobic007G030600 Sobic009G047700 Sobic009G047700 Sobic008G039000--Sobic009G047700 Sobic009G116400 Sobic009G116400 Sobic008G039000--Sobic009G116400 Sobic005G123400 Sobic005G123400 Sobic008G039000--Sobic005G123400 Sobic007G087900 Sobic007G087900 Sobic008G039000--Sobic007G087900 Sobic006G262800 Sobic006G262800 Sobic008G039000--Sobic006G262800 Sobic004G291400 Sobic004G291400 Sobic006G216000--Sobic004G291400 Sobic006G216000--Sobic002G253100 Sobic006G216000--Sobic003G119400 Sobic006G252100 Sobic006G252100 Sobic006G216000--Sobic006G252100 Sobic002G083400 Sobic002G083400 Sobic006G216000--Sobic002G083400 Sobic006G216000--Sobic001G152000 Sobic001G296400 Sobic001G296400 Sobic006G216000--Sobic001G296400 Sobic001G471600 Sobic001G471600 Sobic006G216000--Sobic001G471600 Sobic001G335201 Sobic001G335201 Sobic006G216000--Sobic001G335201 Sobic001G485600--Sobic008G056900 Sobic001G485600--Sobic009G096100 Sobic003G324100 Sobic003G324100 Sobic001G485600--Sobic003G324100 Sobic003G245900 Sobic003G245900 Sobic001G485600--Sobic003G245900 Sobic001G362300 Sobic001G362300 Sobic001G485600--Sobic001G362300 Sobic008G081600 Sobic008G081600 Sobic001G485600--Sobic008G081600 Sobic005G100900 Sobic005G100900 Sobic001G485600--Sobic005G100900 Sobic003G174800 Sobic003G174800 Sobic001G485600--Sobic003G174800 Sobic007G197400 Sobic007G197400 Sobic001G485600--Sobic007G197400 Sobic001G463500 Sobic001G463500 Sobic002G330500--Sobic001G463500 Sobic002G333100 Sobic002G333100 Sobic002G330500--Sobic002G333100 Sobic007G171950 Sobic007G171950 Sobic002G330500--Sobic007G171950 Sobic002G330500--Sobic001G471600 Sobic003G218801 Sobic003G218801 Sobic002G330500--Sobic003G218801 Sobic002G133100 Sobic002G133100 Sobic002G330500--Sobic002G133100 Sobic002G330500--Sobic001G296400 Sobic002G330500--Sobic001G088800 Sobic004G260400 Sobic004G260400 Sobic002G330500--Sobic004G260400 Sobic008G056900--Sobic009G096100 Sobic008G056900--Sobic001G485600 Sobic008G056900--Sobic008G081600 Sobic007G000400 Sobic007G000400 Sobic008G056900--Sobic007G000400 Sobic002G344500 Sobic002G344500 Sobic008G056900--Sobic002G344500 Sobic008G056900--Sobic007G197400 Sobic004G227100 Sobic004G227100 Sobic008G056900--Sobic004G227100 Sobic007G077700 Sobic007G077700 Sobic008G056900--Sobic007G077700 Sobic001G087100 Sobic001G087100 Sobic008G056900--Sobic001G087100 Sobic009G096100--Sobic008G056900 Sobic002G192500 Sobic002G192500 Sobic009G096100--Sobic002G192500 Sobic010G157700 Sobic010G157700 Sobic009G096100--Sobic010G157700 Sobic009G096100--Sobic001G485600 Sobic006G056000 Sobic006G056000 Sobic009G096100--Sobic006G056000 Sobic007G043900 Sobic007G043900 Sobic009G096100--Sobic007G043900 Sobic009G096100--Sobic002G344500 Sobic002G380100 Sobic002G380100 Sobic009G096100--Sobic002G380100 Sobic009G096100--Sobic007G077700 Sobic001G144600 Sobic001G144600 Sobic003G368800--Sobic001G144600 Sobic002G174900 Sobic002G174900 Sobic003G368800--Sobic002G174900 Sobic005G025300 Sobic005G025300 Sobic003G368800--Sobic005G025300 Sobic002G040800 Sobic002G040800 Sobic003G368800--Sobic002G040800 Sobic004G147200 Sobic004G147200 Sobic003G368800--Sobic004G147200 Sobic002G227200 Sobic002G227200 Sobic003G368800--Sobic002G227200 Sobic004G227300 Sobic004G227300 Sobic003G368800--Sobic004G227300 Sobic001G276200 Sobic001G276200 Sobic003G368800--Sobic001G276200 Sobic001G429300 Sobic001G429300 Sobic003G368800--Sobic001G429300 Sobic010G099300 Sobic010G099300 Sobic002G407800--Sobic010G099300 Sobic001G040600 Sobic001G040600 Sobic002G407800--Sobic001G040600 Sobic001G254400 Sobic001G254400 Sobic002G407800--Sobic001G254400 Sobic003G051500 Sobic003G051500 Sobic002G407800--Sobic003G051500 Sobic001G395300 Sobic001G395300 Sobic002G407800--Sobic001G395300 Sobic001G081300 Sobic001G081300 Sobic002G407800--Sobic001G081300 Sobic002G389200 Sobic002G389200 Sobic002G407800--Sobic002G389200 Sobic007G182600 Sobic007G182600 Sobic002G407800--Sobic007G182600 Sobic002G407800--Sobic008G056900
Octagon: transcription factors


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