Gene annotation
Transcriptome id Sobic.002G407800.3
Synonym ATIPT9, IPT9, Sb02g042160
Functional annotation IPP transferase, putative, expressed
UniProt A0A1B6QG61
Pfam PF01745
Panther DB PTHR11088 PTHR11088:SF31
NCBI CDD KOG1384; tRNA delta(2)-isopentenylpyrophosphate transferase
KEGG Orthology K00791; miaA, tRNA dimethylallyltransferase
Gene Ontology GO:0009058; biosynthetic process GO:0004161dimethylallyltranstransferase activity


Orthologs (automatic annotation)
TAIR AT5G20040 : isopentenyltransferase 9
RAP-DB (Rice) LOC_Os06g51350.1 : IPP transferase, putative, expressed
MaizeGDB (Corn) Zm00025a041678
Brachypodium PNT75280
Barley HORVU7Hr1G120070.11 , HORVU7Hr1G120070.10 , HORVU7Hr1G120070.13 , HORVU7Hr1G120070.12 , HORVU7Hr1G120070.15 , HORVU7Hr1G120070.14 , HORVU7Hr1G120070.5 , HORVU7Hr1G120070.4 , HORVU7Hr1G120070.7 , HORVU7Hr1G120070.6 , HORVU7Hr1G120070.1 , HORVU7Hr1G120070.3 , HORVU7Hr1G120070.2 , HORVU7Hr1G120070.9 , HORVU7Hr1G120070.8
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G099300 - K03501: gidB, 16S rRNA (guanine527-N7)-methyltransferase
2 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A
3 Sobic.001G254400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized oxidoreductase, putative, expressed -
4 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
5 Sobic.001G395300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsClp4 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
6 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.002G389200 pentatricopeptide repeat domain containing protein, putative, expressed -
8 Sobic.007G182600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
9 Sobic.008G056900 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
10 Sobic.004G250100 pentatricopeptide, putative, expressed -
11 Sobic.007G185600 methyltransferase domain containing protein, expressed K15190: MEPCE, 7SK snRNA methylphosphate capping enzyme
12 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
13 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
14 Sobic.001G001200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.001G212200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@LOI1, putative, expressed -
16 Sobic.007G179600 pentatricopeptide, putative, expressed -
17 Sobic.001G088800 N2, N2-dimethylguanosine tRNA methyltransferase, putative, expressed -
18 Sobic.010G232700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
19 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3
20 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -


Gene co-expression network
sample Sobic002G407800 Sobic002G407800 Sobic010G099300 Sobic010G099300 Sobic002G407800--Sobic010G099300 Sobic001G040600 Sobic001G040600 Sobic002G407800--Sobic001G040600 Sobic001G254400 Sobic001G254400 Sobic002G407800--Sobic001G254400 Sobic003G051500 Sobic003G051500 Sobic002G407800--Sobic003G051500 Sobic001G395300 Sobic001G395300 Sobic002G407800--Sobic001G395300 Sobic001G081300 Sobic001G081300 Sobic002G407800--Sobic001G081300 Sobic002G389200 Sobic002G389200 Sobic002G407800--Sobic002G389200 Sobic007G182600 Sobic007G182600 Sobic002G407800--Sobic007G182600 Sobic008G056900 Sobic008G056900 Sobic002G407800--Sobic008G056900 Sobic010G099300--Sobic001G040600 Sobic010G099300--Sobic007G182600 Sobic007G060600 Sobic007G060600 Sobic010G099300--Sobic007G060600 Sobic010G099300--Sobic001G081300 Sobic001G437801 Sobic001G437801 Sobic010G099300--Sobic001G437801 Sobic001G049800 Sobic001G049800 Sobic010G099300--Sobic001G049800 Sobic010G099300--Sobic003G051500 Sobic010G099300--Sobic001G395300 Sobic006G271900 Sobic006G271900 Sobic010G099300--Sobic006G271900 Sobic001G040600--Sobic007G060600 Sobic001G040600--Sobic006G271900 Sobic001G040600--Sobic010G099300 Sobic003G336500 Sobic003G336500 Sobic001G040600--Sobic003G336500 Sobic001G040600--Sobic001G049800 Sobic001G040600--Sobic003G051500 Sobic008G100400 Sobic008G100400 Sobic001G040600--Sobic008G100400 Sobic001G040600--Sobic001G081300 Sobic002G251800 Sobic002G251800 Sobic001G040600--Sobic002G251800 Sobic007G060900 Sobic007G060900 Sobic001G254400--Sobic007G060900 Sobic002G172600 Sobic002G172600 Sobic001G254400--Sobic002G172600 Sobic003G128000 Sobic003G128000 Sobic001G254400--Sobic003G128000 Sobic008G185900 Sobic008G185900 Sobic001G254400--Sobic008G185900 Sobic004G247800 Sobic004G247800 Sobic001G254400--Sobic004G247800 Sobic001G254400--Sobic002G407800 Sobic003G176200 Sobic003G176200 Sobic001G254400--Sobic003G176200 Sobic004G216700 Sobic004G216700 Sobic001G254400--Sobic004G216700 Sobic001G141300 Sobic001G141300 Sobic001G254400--Sobic001G141300 Sobic001G391101 Sobic001G391101 Sobic003G051500--Sobic001G391101 Sobic001G001200 Sobic001G001200 Sobic003G051500--Sobic001G001200 Sobic005G028300 Sobic005G028300 Sobic003G051500--Sobic005G028300 Sobic003G051500--Sobic001G040600 Sobic003G051500--Sobic001G081300 Sobic003G419800 Sobic003G419800 Sobic003G051500--Sobic003G419800 Sobic003G051500--Sobic007G182600 Sobic003G051500--Sobic010G099300 Sobic004G217900 Sobic004G217900 Sobic003G051500--Sobic004G217900 Sobic009G137000 Sobic009G137000 Sobic001G395300--Sobic009G137000 Sobic002G404900 Sobic002G404900 Sobic001G395300--Sobic002G404900 Sobic001G228300 Sobic001G228300 Sobic001G395300--Sobic001G228300 Sobic006G237100 Sobic006G237100 Sobic001G395300--Sobic006G237100 Sobic006G263800 Sobic006G263800 Sobic001G395300--Sobic006G263800 Sobic002G140000 Sobic002G140000 Sobic001G395300--Sobic002G140000 Sobic006G204100 Sobic006G204100 Sobic001G395300--Sobic006G204100 Sobic007G116100 Sobic007G116100 Sobic001G395300--Sobic007G116100 Sobic010G027200 Sobic010G027200 Sobic001G395300--Sobic010G027200 Sobic001G081300--Sobic001G391101 Sobic007G179600 Sobic007G179600 Sobic001G081300--Sobic007G179600 Sobic001G347100 Sobic001G347100 Sobic001G081300--Sobic001G347100 Sobic009G238700 Sobic009G238700 Sobic001G081300--Sobic009G238700 Sobic001G081300--Sobic003G051500 Sobic001G081300--Sobic003G419800 Sobic001G081300--Sobic007G060600 Sobic001G081300--Sobic001G049800 Sobic001G081300--Sobic010G099300 Sobic002G389200--Sobic005G028300 Sobic009G155400 Sobic009G155400 Sobic002G389200--Sobic009G155400 Sobic002G240900 Sobic002G240900 Sobic002G389200--Sobic002G240900 Sobic006G069100 Sobic006G069100 Sobic002G389200--Sobic006G069100 Sobic006G085900 Sobic006G085900 Sobic002G389200--Sobic006G085900 Sobic002G389200--Sobic003G419800 Sobic002G389200--Sobic002G251800 Sobic005G011000 Sobic005G011000 Sobic002G389200--Sobic005G011000 Sobic002G389200--Sobic007G179600 Sobic007G182600--Sobic008G100400 Sobic007G182600--Sobic010G099300 Sobic001G061600 Sobic001G061600 Sobic007G182600--Sobic001G061600 Sobic007G182600--Sobic001G081300 Sobic007G182600--Sobic001G040600 Sobic008G147400 Sobic008G147400 Sobic007G182600--Sobic008G147400 Sobic007G182600--Sobic003G051500 Sobic010G252000 Sobic010G252000 Sobic007G182600--Sobic010G252000 Sobic002G380100 Sobic002G380100 Sobic007G182600--Sobic002G380100 Sobic009G096100 Sobic009G096100 Sobic008G056900--Sobic009G096100 Sobic001G485600 Sobic001G485600 Sobic008G056900--Sobic001G485600 Sobic008G081600 Sobic008G081600 Sobic008G056900--Sobic008G081600 Sobic007G000400 Sobic007G000400 Sobic008G056900--Sobic007G000400 Sobic002G344500 Sobic002G344500 Sobic008G056900--Sobic002G344500 Sobic007G197400 Sobic007G197400 Sobic008G056900--Sobic007G197400 Sobic004G227100 Sobic004G227100 Sobic008G056900--Sobic004G227100 Sobic007G077700 Sobic007G077700 Sobic008G056900--Sobic007G077700 Sobic001G087100 Sobic001G087100 Sobic008G056900--Sobic001G087100
Octagon: transcription factors


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