Gene annotation
Transcriptome id Sobic.001G001200.1
Synonym Sb01g000260
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt C5WRU1
Pfam PF13812 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF521
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G52850 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os03g64370.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a009161
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.001G001200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
2 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
3 Sobic.003G419800 pentatricopeptide repeat protein PPR1106-17, putative, expressed -
4 Sobic.001G391101 - -
5 Sobic.001G390900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
6 Sobic.003G183900 pentatricopeptide, putative, expressed -
7 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.007G179600 pentatricopeptide, putative, expressed -
9 Sobic.010G083900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed -
10 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
11 Sobic.002G240900 pentatricopeptide, putative, expressed -
12 Sobic.001G401400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
13 Sobic.002G389200 pentatricopeptide repeat domain containing protein, putative, expressed -
14 Sobic.010G123700 expressed protein -
15 Sobic.002G251800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
16 Sobic.005G011000 Rf1, mitochondrial precursor, putative, expressed -
17 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3
18 Sobic.003G014700 pentatricopeptide, putative, expressed -
19 Sobic.003G237100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CRR2, putative, expressed -
20 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic001G001200 Sobic001G001200 Sobic003G051500 Sobic003G051500 Sobic001G001200--Sobic003G051500 Sobic005G028300 Sobic005G028300 Sobic001G001200--Sobic005G028300 Sobic003G419800 Sobic003G419800 Sobic001G001200--Sobic003G419800 Sobic001G391101 Sobic001G391101 Sobic001G001200--Sobic001G391101 Sobic001G390900 Sobic001G390900 Sobic001G001200--Sobic001G390900 Sobic003G183900 Sobic003G183900 Sobic001G001200--Sobic003G183900 Sobic001G081300 Sobic001G081300 Sobic001G001200--Sobic001G081300 Sobic007G179600 Sobic007G179600 Sobic001G001200--Sobic007G179600 Sobic010G083900 Sobic010G083900 Sobic001G001200--Sobic010G083900 Sobic003G051500--Sobic001G391101 Sobic003G051500--Sobic001G001200 Sobic003G051500--Sobic005G028300 Sobic001G040600 Sobic001G040600 Sobic003G051500--Sobic001G040600 Sobic003G051500--Sobic001G081300 Sobic003G051500--Sobic003G419800 Sobic007G182600 Sobic007G182600 Sobic003G051500--Sobic007G182600 Sobic010G099300 Sobic010G099300 Sobic003G051500--Sobic010G099300 Sobic004G217900 Sobic004G217900 Sobic003G051500--Sobic004G217900 Sobic002G389200 Sobic002G389200 Sobic005G028300--Sobic002G389200 Sobic005G028300--Sobic003G051500 Sobic002G251800 Sobic002G251800 Sobic005G028300--Sobic002G251800 Sobic005G028300--Sobic001G001200 Sobic005G028300--Sobic003G419800 Sobic003G014700 Sobic003G014700 Sobic005G028300--Sobic003G014700 Sobic005G028300--Sobic001G391101 Sobic002G084400 Sobic002G084400 Sobic005G028300--Sobic002G084400 Sobic005G028300--Sobic010G083900 Sobic003G419800--Sobic005G028300 Sobic003G419800--Sobic001G001200 Sobic003G419800--Sobic007G179600 Sobic003G419800--Sobic001G081300 Sobic003G419800--Sobic003G051500 Sobic003G419800--Sobic001G391101 Sobic003G419800--Sobic001G390900 Sobic003G419800--Sobic003G014700 Sobic003G419800--Sobic007G182600 Sobic001G391101--Sobic001G081300 Sobic001G347100 Sobic001G347100 Sobic001G391101--Sobic001G347100 Sobic001G391101--Sobic003G051500 Sobic001G391101--Sobic005G028300 Sobic001G391101--Sobic007G179600 Sobic001G391101--Sobic003G419800 Sobic001G391101--Sobic003G014700 Sobic001G391101--Sobic001G001200 Sobic004G241000 Sobic004G241000 Sobic001G391101--Sobic004G241000 Sobic001G390900--Sobic003G419800 Sobic001G390900--Sobic001G001200 Sobic001G390900--Sobic003G051500 Sobic001G390900--Sobic010G099300 Sobic001G390900--Sobic001G081300 Sobic001G390900--Sobic010G083900 Sobic001G322600 Sobic001G322600 Sobic001G390900--Sobic001G322600 Sobic001G390900--Sobic005G028300 Sobic002G240900 Sobic002G240900 Sobic001G390900--Sobic002G240900 Sobic003G183900--Sobic001G001200 Sobic003G183900--Sobic001G322600 Sobic003G183900--Sobic010G083900 Sobic001G401400 Sobic001G401400 Sobic003G183900--Sobic001G401400 Sobic003G322200 Sobic003G322200 Sobic003G183900--Sobic003G322200 Sobic010G123700 Sobic010G123700 Sobic003G183900--Sobic010G123700 Sobic003G407600 Sobic003G407600 Sobic003G183900--Sobic003G407600 Sobic002G172600 Sobic002G172600 Sobic003G183900--Sobic002G172600 Sobic003G128000 Sobic003G128000 Sobic003G183900--Sobic003G128000 Sobic001G081300--Sobic001G391101 Sobic001G081300--Sobic007G179600 Sobic001G081300--Sobic001G347100 Sobic009G238700 Sobic009G238700 Sobic001G081300--Sobic009G238700 Sobic001G081300--Sobic003G051500 Sobic001G081300--Sobic003G419800 Sobic007G060600 Sobic007G060600 Sobic001G081300--Sobic007G060600 Sobic001G049800 Sobic001G049800 Sobic001G081300--Sobic001G049800 Sobic001G081300--Sobic010G099300 Sobic007G179600--Sobic001G081300 Sobic007G179600--Sobic001G347100 Sobic007G179600--Sobic003G419800 Sobic007G179600--Sobic001G391101 Sobic005G210700 Sobic005G210700 Sobic007G179600--Sobic005G210700 Sobic007G179600--Sobic009G238700 Sobic008G066900 Sobic008G066900 Sobic007G179600--Sobic008G066900 Sobic008G099900 Sobic008G099900 Sobic007G179600--Sobic008G099900 Sobic007G210801 Sobic007G210801 Sobic007G179600--Sobic007G210801 Sobic002G378100 Sobic002G378100 Sobic010G083900--Sobic002G378100 Sobic010G083900--Sobic001G322600 Sobic010G083900--Sobic001G049800 Sobic001G422500 Sobic001G422500 Sobic010G083900--Sobic001G422500 Sobic010G224700 Sobic010G224700 Sobic010G083900--Sobic010G224700 Sobic004G151000 Sobic004G151000 Sobic010G083900--Sobic004G151000 Sobic010G083900--Sobic003G014700 Sobic010G083900--Sobic005G028300 Sobic001G119600 Sobic001G119600 Sobic010G083900--Sobic001G119600
Octagon: transcription factors


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