Gene annotation
Transcriptome id Sobic.003G237100.2
Synonym MEF19, Sb03g029460
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
CRR2, putative, expressed
UniProt A0A1W0VYN6
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF410
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G11290 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os06g08650.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
2 Sobic.001G001200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.001G158400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@recA protein, putative, expressed K03553: recombination protein RecA
4 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
5 Sobic.010G099300 - K03501: gidB, 16S rRNA (guanine527-N7)-methyltransferase
6 Sobic.009G253200 RNA polymerase sigma factor, putative, expressed -
7 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A
8 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
9 Sobic.005G011000 Rf1, mitochondrial precursor, putative, expressed -
10 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3
11 Sobic.003G419800 pentatricopeptide repeat protein PPR1106-17, putative, expressed -
12 Sobic.001G390900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
13 Sobic.007G182600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
14 Sobic.002G240900 pentatricopeptide, putative, expressed -
15 Sobic.010G277200 zinc knuckle domain containing protein, expressed K10904: TIMELESS-interacting protein
16 Sobic.002G251800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
17 Sobic.010G092801 - -
18 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
19 Sobic.001G049800 DDT domain containing protein, putative, expressed -
20 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -


Gene co-expression network
sample Sobic003G237100 Sobic003G237100 Sobic003G051500 Sobic003G051500 Sobic003G237100--Sobic003G051500 Sobic001G001200 Sobic001G001200 Sobic003G237100--Sobic001G001200 Sobic001G158400 Sobic001G158400 Sobic003G237100--Sobic001G158400 Sobic004G217900 Sobic004G217900 Sobic003G237100--Sobic004G217900 Sobic010G099300 Sobic010G099300 Sobic003G237100--Sobic010G099300 Sobic009G253200 Sobic009G253200 Sobic003G237100--Sobic009G253200 Sobic001G040600 Sobic001G040600 Sobic003G237100--Sobic001G040600 Sobic005G028300 Sobic005G028300 Sobic003G237100--Sobic005G028300 Sobic005G011000 Sobic005G011000 Sobic003G237100--Sobic005G011000 Sobic001G391101 Sobic001G391101 Sobic003G051500--Sobic001G391101 Sobic003G051500--Sobic001G001200 Sobic003G051500--Sobic005G028300 Sobic003G051500--Sobic001G040600 Sobic001G081300 Sobic001G081300 Sobic003G051500--Sobic001G081300 Sobic003G419800 Sobic003G419800 Sobic003G051500--Sobic003G419800 Sobic007G182600 Sobic007G182600 Sobic003G051500--Sobic007G182600 Sobic003G051500--Sobic010G099300 Sobic003G051500--Sobic004G217900 Sobic001G001200--Sobic003G051500 Sobic001G001200--Sobic005G028300 Sobic001G001200--Sobic003G419800 Sobic001G001200--Sobic001G391101 Sobic001G390900 Sobic001G390900 Sobic001G001200--Sobic001G390900 Sobic003G183900 Sobic003G183900 Sobic001G001200--Sobic003G183900 Sobic001G001200--Sobic001G081300 Sobic007G179600 Sobic007G179600 Sobic001G001200--Sobic007G179600 Sobic010G083900 Sobic010G083900 Sobic001G001200--Sobic010G083900 Sobic002G235600 Sobic002G235600 Sobic001G158400--Sobic002G235600 Sobic001G158400--Sobic010G099300 Sobic005G022000 Sobic005G022000 Sobic001G158400--Sobic005G022000 Sobic003G136400 Sobic003G136400 Sobic001G158400--Sobic003G136400 Sobic001G158400--Sobic003G051500 Sobic001G158400--Sobic003G237100 Sobic001G158400--Sobic001G390900 Sobic001G441200 Sobic001G441200 Sobic001G158400--Sobic001G441200 Sobic001G158400--Sobic004G217900 Sobic009G155400 Sobic009G155400 Sobic004G217900--Sobic009G155400 Sobic008G163400 Sobic008G163400 Sobic004G217900--Sobic008G163400 Sobic009G116400 Sobic009G116400 Sobic004G217900--Sobic009G116400 Sobic001G187800 Sobic001G187800 Sobic004G217900--Sobic001G187800 Sobic008G099900 Sobic008G099900 Sobic004G217900--Sobic008G099900 Sobic004G217900--Sobic003G051500 Sobic004G241000 Sobic004G241000 Sobic004G217900--Sobic004G241000 Sobic010G190900 Sobic010G190900 Sobic004G217900--Sobic010G190900 Sobic001G149100 Sobic001G149100 Sobic004G217900--Sobic001G149100 Sobic010G099300--Sobic001G040600 Sobic010G099300--Sobic007G182600 Sobic007G060600 Sobic007G060600 Sobic010G099300--Sobic007G060600 Sobic010G099300--Sobic001G081300 Sobic001G437801 Sobic001G437801 Sobic010G099300--Sobic001G437801 Sobic001G049800 Sobic001G049800 Sobic010G099300--Sobic001G049800 Sobic010G099300--Sobic003G051500 Sobic001G395300 Sobic001G395300 Sobic010G099300--Sobic001G395300 Sobic006G271900 Sobic006G271900 Sobic010G099300--Sobic006G271900 Sobic009G253200--Sobic006G271900 Sobic009G253200--Sobic008G099900 Sobic002G251800 Sobic002G251800 Sobic009G253200--Sobic002G251800 Sobic007G038700 Sobic007G038700 Sobic009G253200--Sobic007G038700 Sobic005G148400 Sobic005G148400 Sobic009G253200--Sobic005G148400 Sobic009G253200--Sobic001G001200 Sobic006G099501 Sobic006G099501 Sobic009G253200--Sobic006G099501 Sobic005G210700 Sobic005G210700 Sobic009G253200--Sobic005G210700 Sobic009G253200--Sobic005G028300 Sobic001G040600--Sobic007G060600 Sobic001G040600--Sobic006G271900 Sobic001G040600--Sobic010G099300 Sobic003G336500 Sobic003G336500 Sobic001G040600--Sobic003G336500 Sobic001G040600--Sobic001G049800 Sobic001G040600--Sobic003G051500 Sobic008G100400 Sobic008G100400 Sobic001G040600--Sobic008G100400 Sobic001G040600--Sobic001G081300 Sobic001G040600--Sobic002G251800 Sobic002G389200 Sobic002G389200 Sobic005G028300--Sobic002G389200 Sobic005G028300--Sobic003G051500 Sobic005G028300--Sobic002G251800 Sobic005G028300--Sobic001G001200 Sobic005G028300--Sobic003G419800 Sobic003G014700 Sobic003G014700 Sobic005G028300--Sobic003G014700 Sobic005G028300--Sobic001G391101 Sobic002G084400 Sobic002G084400 Sobic005G028300--Sobic002G084400 Sobic005G028300--Sobic010G083900 Sobic005G011000--Sobic006G271900 Sobic005G011000--Sobic009G116400 Sobic004G036700 Sobic004G036700 Sobic005G011000--Sobic004G036700 Sobic001G347100 Sobic001G347100 Sobic005G011000--Sobic001G347100 Sobic005G011000--Sobic005G210700 Sobic005G011000--Sobic001G187800 Sobic005G011000--Sobic003G419800 Sobic005G011000--Sobic002G389200 Sobic005G011000--Sobic005G028300
Octagon: transcription factors


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