Gene annotation
Transcriptome id Sobic.009G253200.1
Synonym SIG3, SIGC, Sb09g030380
Functional annotation RNA polymerase sigma factor, putative, expressed
UniProt A0A1B6PAJ8
Pfam PF04542
Panther DB PTHR30603 PTHR30603:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016987; sigma factor activity GO:0006355regulation of transcription, DNA-templated GO:0006352DNA-templated transcription, initiation GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G53920 : RNApolymerase sigma-subunit C
RAP-DB (Rice) LOC_Os05g51150.3 : RNA polymerase sigma factor, putative, expressed
MaizeGDB (Corn) Zm00025a044777
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3
2 Sobic.008G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
3 Sobic.002G251800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
4 Sobic.007G038700 zinc finger, C3HC4 type domain containing protein, expressed K11985: TRAIP, TRAF-interacting protein
5 Sobic.005G148400 OsFBX404 - F-box domain containing protein, expressed -
6 Sobic.001G001200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.006G099501 - -
8 Sobic.005G210700 pentatricopeptide repeat domain containing protein, putative, expressed -
9 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
10 Sobic.005G011000 Rf1, mitochondrial precursor, putative, expressed -
11 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A
12 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
13 Sobic.003G237100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CRR2, putative, expressed -
14 Sobic.001G182000 MBTB51 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
15 Sobic.002G344301 - -
16 Sobic.002G128400 WRKY115, expressed -
17 Sobic.010G092801 - -
18 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
19 Sobic.006G085900 pentatricopeptide, putative, expressed -
20 Sobic.008G066900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic009G253200 Sobic009G253200 Sobic006G271900 Sobic006G271900 Sobic009G253200--Sobic006G271900 Sobic008G099900 Sobic008G099900 Sobic009G253200--Sobic008G099900 Sobic002G251800 Sobic002G251800 Sobic009G253200--Sobic002G251800 Sobic007G038700 Sobic007G038700 Sobic009G253200--Sobic007G038700 Sobic005G148400 Sobic005G148400 Sobic009G253200--Sobic005G148400 Sobic001G001200 Sobic001G001200 Sobic009G253200--Sobic001G001200 Sobic006G099501 Sobic006G099501 Sobic009G253200--Sobic006G099501 Sobic005G210700 Sobic005G210700 Sobic009G253200--Sobic005G210700 Sobic005G028300 Sobic005G028300 Sobic009G253200--Sobic005G028300 Sobic001G040600 Sobic001G040600 Sobic006G271900--Sobic001G040600 Sobic007G060600 Sobic007G060600 Sobic006G271900--Sobic007G060600 Sobic006G271900--Sobic009G253200 Sobic001G049800 Sobic001G049800 Sobic006G271900--Sobic001G049800 Sobic006G111200 Sobic006G111200 Sobic006G271900--Sobic006G111200 Sobic006G271900--Sobic002G251800 Sobic001G480400 Sobic001G480400 Sobic006G271900--Sobic001G480400 Sobic006G271900--Sobic005G028300 Sobic001G081300 Sobic001G081300 Sobic006G271900--Sobic001G081300 Sobic008G099900--Sobic005G210700 Sobic006G085900 Sobic006G085900 Sobic008G099900--Sobic006G085900 Sobic009G155400 Sobic009G155400 Sobic008G099900--Sobic009G155400 Sobic008G099900--Sobic002G251800 Sobic004G217900 Sobic004G217900 Sobic008G099900--Sobic004G217900 Sobic006G109400 Sobic006G109400 Sobic008G099900--Sobic006G109400 Sobic009G116400 Sobic009G116400 Sobic008G099900--Sobic009G116400 Sobic007G179600 Sobic007G179600 Sobic008G099900--Sobic007G179600 Sobic008G099900--Sobic006G271900 Sobic002G251800--Sobic005G028300 Sobic002G251800--Sobic007G038700 Sobic002G084400 Sobic002G084400 Sobic002G251800--Sobic002G084400 Sobic002G251800--Sobic006G271900 Sobic002G251800--Sobic001G040600 Sobic002G251800--Sobic008G099900 Sobic002G251800--Sobic006G085900 Sobic002G251800--Sobic007G060600 Sobic002G251800--Sobic001G049800 Sobic007G038700--Sobic002G251800 Sobic010G277200 Sobic010G277200 Sobic007G038700--Sobic010G277200 Sobic008G123200 Sobic008G123200 Sobic007G038700--Sobic008G123200 Sobic003G336500 Sobic003G336500 Sobic007G038700--Sobic003G336500 Sobic009G105400 Sobic009G105400 Sobic007G038700--Sobic009G105400 Sobic005G078700 Sobic005G078700 Sobic007G038700--Sobic005G078700 Sobic001G194700 Sobic001G194700 Sobic007G038700--Sobic001G194700 Sobic003G153900 Sobic003G153900 Sobic007G038700--Sobic003G153900 Sobic008G031200 Sobic008G031200 Sobic007G038700--Sobic008G031200 Sobic005G085100 Sobic005G085100 Sobic005G148400--Sobic005G085100 Sobic005G148500 Sobic005G148500 Sobic005G148400--Sobic005G148500 Sobic005G043400 Sobic005G043400 Sobic005G148400--Sobic005G043400 Sobic005G221550 Sobic005G221550 Sobic005G148400--Sobic005G221550 Sobic002G060500 Sobic002G060500 Sobic005G148400--Sobic002G060500 Sobic009G101600 Sobic009G101600 Sobic005G148400--Sobic009G101600 Sobic005G170800 Sobic005G170800 Sobic005G148400--Sobic005G170800 Sobic005G142200 Sobic005G142200 Sobic005G148400--Sobic005G142200 Sobic002G128400 Sobic002G128400 Sobic005G148400--Sobic002G128400 Sobic003G051500 Sobic003G051500 Sobic001G001200--Sobic003G051500 Sobic001G001200--Sobic005G028300 Sobic003G419800 Sobic003G419800 Sobic001G001200--Sobic003G419800 Sobic001G391101 Sobic001G391101 Sobic001G001200--Sobic001G391101 Sobic001G390900 Sobic001G390900 Sobic001G001200--Sobic001G390900 Sobic003G183900 Sobic003G183900 Sobic001G001200--Sobic003G183900 Sobic001G001200--Sobic001G081300 Sobic001G001200--Sobic007G179600 Sobic010G083900 Sobic010G083900 Sobic001G001200--Sobic010G083900 Sobic006G099501--Sobic005G043400 Sobic002G059800 Sobic002G059800 Sobic006G099501--Sobic002G059800 Sobic010G143400 Sobic010G143400 Sobic006G099501--Sobic010G143400 Sobic006G099501--Sobic002G128400 Sobic008G106400 Sobic008G106400 Sobic006G099501--Sobic008G106400 Sobic006G099501--Sobic005G148500 Sobic006G099501--Sobic005G085100 Sobic001G164200 Sobic001G164200 Sobic006G099501--Sobic001G164200 Sobic002G094500 Sobic002G094500 Sobic006G099501--Sobic002G094500 Sobic005G210700--Sobic008G099900 Sobic005G210700--Sobic009G155400 Sobic005G210700--Sobic009G116400 Sobic005G210700--Sobic006G085900 Sobic005G210700--Sobic007G179600 Sobic001G347100 Sobic001G347100 Sobic005G210700--Sobic001G347100 Sobic008G066900 Sobic008G066900 Sobic005G210700--Sobic008G066900 Sobic006G069100 Sobic006G069100 Sobic005G210700--Sobic006G069100 Sobic005G011000 Sobic005G011000 Sobic005G210700--Sobic005G011000 Sobic002G389200 Sobic002G389200 Sobic005G028300--Sobic002G389200 Sobic005G028300--Sobic003G051500 Sobic005G028300--Sobic002G251800 Sobic005G028300--Sobic001G001200 Sobic005G028300--Sobic003G419800 Sobic003G014700 Sobic003G014700 Sobic005G028300--Sobic003G014700 Sobic005G028300--Sobic001G391101 Sobic005G028300--Sobic002G084400 Sobic005G028300--Sobic010G083900
Octagon: transcription factors


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