Gene annotation
Transcriptome id Sobic.007G038700.1
Synonym Sb07g003290
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1B6PFD5
Pfam PF13639
Panther DB PTHR22937 PTHR22937:SF6
NCBI CDD -
KEGG Orthology K11985; TRAIP, TRAF-interacting protein
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT4G01270 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os08g05560.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a055225
Brachypodium KQJ95424 , KQJ95425
Barley HORVU7Hr1G072390.1 , HORVU7Hr1G072390.2 , HORVU7Hr1G072390.3
Wheat TraesCS7D02G299600 , TraesCS7D02G299600 , TraesCS7A02G304100 , TraesCS7B02G204500
Populus -


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cDNA sequences
Sobic.007G038700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G251800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
2 Sobic.010G277200 zinc knuckle domain containing protein, expressed K10904: TIMELESS-interacting protein
3 Sobic.008G123200 AAA-type ATPase family protein, putative, expressed -
4 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
5 Sobic.009G105400 OsFBX135 - F-box domain containing protein, expressed -
6 Sobic.005G078700 OsFBX411 - F-box domain containing protein, expressed -
7 Sobic.001G194700 - -
8 Sobic.003G153900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.008G031200 pentatricopeptide, putative, expressed -
10 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A
11 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
12 Sobic.001G408300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.006G085900 pentatricopeptide, putative, expressed -
14 Sobic.001G264201 - -
15 Sobic.008G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
16 Sobic.002G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
17 Sobic.009G253200 RNA polymerase sigma factor, putative, expressed -
18 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3
19 Sobic.001G199500 heat shock protein DnaJ, putative, expressed K09531: DnaJ homolog subfamily C member 11
20 Sobic.007G031300 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -


Gene co-expression network
sample Sobic007G038700 Sobic007G038700 Sobic002G251800 Sobic002G251800 Sobic007G038700--Sobic002G251800 Sobic010G277200 Sobic010G277200 Sobic007G038700--Sobic010G277200 Sobic008G123200 Sobic008G123200 Sobic007G038700--Sobic008G123200 Sobic003G336500 Sobic003G336500 Sobic007G038700--Sobic003G336500 Sobic009G105400 Sobic009G105400 Sobic007G038700--Sobic009G105400 Sobic005G078700 Sobic005G078700 Sobic007G038700--Sobic005G078700 Sobic001G194700 Sobic001G194700 Sobic007G038700--Sobic001G194700 Sobic003G153900 Sobic003G153900 Sobic007G038700--Sobic003G153900 Sobic008G031200 Sobic008G031200 Sobic007G038700--Sobic008G031200 Sobic005G028300 Sobic005G028300 Sobic002G251800--Sobic005G028300 Sobic002G251800--Sobic007G038700 Sobic002G084400 Sobic002G084400 Sobic002G251800--Sobic002G084400 Sobic006G271900 Sobic006G271900 Sobic002G251800--Sobic006G271900 Sobic001G040600 Sobic001G040600 Sobic002G251800--Sobic001G040600 Sobic008G099900 Sobic008G099900 Sobic002G251800--Sobic008G099900 Sobic006G085900 Sobic006G085900 Sobic002G251800--Sobic006G085900 Sobic007G060600 Sobic007G060600 Sobic002G251800--Sobic007G060600 Sobic001G049800 Sobic001G049800 Sobic002G251800--Sobic001G049800 Sobic010G277200--Sobic007G038700 Sobic010G277200--Sobic003G153900 Sobic009G148200 Sobic009G148200 Sobic010G277200--Sobic009G148200 Sobic004G199200 Sobic004G199200 Sobic010G277200--Sobic004G199200 Sobic001G408300 Sobic001G408300 Sobic010G277200--Sobic001G408300 Sobic008G169400 Sobic008G169400 Sobic010G277200--Sobic008G169400 Sobic007G031300 Sobic007G031300 Sobic010G277200--Sobic007G031300 Sobic006G109400 Sobic006G109400 Sobic010G277200--Sobic006G109400 Sobic003G351900 Sobic003G351900 Sobic010G277200--Sobic003G351900 Sobic005G138000 Sobic005G138000 Sobic008G123200--Sobic005G138000 Sobic009G224300 Sobic009G224300 Sobic008G123200--Sobic009G224300 Sobic008G123200--Sobic003G336500 Sobic001G448000 Sobic001G448000 Sobic008G123200--Sobic001G448000 Sobic010G175000 Sobic010G175000 Sobic008G123200--Sobic010G175000 Sobic008G123200--Sobic007G038700 Sobic004G123200 Sobic004G123200 Sobic008G123200--Sobic004G123200 Sobic008G123200--Sobic009G105400 Sobic008G165266 Sobic008G165266 Sobic008G123200--Sobic008G165266 Sobic008G068100 Sobic008G068100 Sobic003G336500--Sobic008G068100 Sobic003G336500--Sobic001G040600 Sobic009G191500 Sobic009G191500 Sobic003G336500--Sobic009G191500 Sobic003G336500--Sobic007G060600 Sobic001G199500 Sobic001G199500 Sobic003G336500--Sobic001G199500 Sobic001G483800 Sobic001G483800 Sobic003G336500--Sobic001G483800 Sobic005G088900 Sobic005G088900 Sobic003G336500--Sobic005G088900 Sobic009G176300 Sobic009G176300 Sobic003G336500--Sobic009G176300 Sobic008G100400 Sobic008G100400 Sobic003G336500--Sobic008G100400 Sobic006G088820 Sobic006G088820 Sobic009G105400--Sobic006G088820 Sobic001G453500 Sobic001G453500 Sobic009G105400--Sobic001G453500 Sobic006G008300 Sobic006G008300 Sobic009G105400--Sobic006G008300 Sobic002G168000 Sobic002G168000 Sobic009G105400--Sobic002G168000 Sobic009G105400--Sobic004G199200 Sobic001G264201 Sobic001G264201 Sobic009G105400--Sobic001G264201 Sobic009G105400--Sobic009G191500 Sobic010G143600 Sobic010G143600 Sobic009G105400--Sobic010G143600 Sobic009G105400--Sobic008G068100 Sobic003G325900 Sobic003G325900 Sobic005G078700--Sobic003G325900 Sobic005G078700--Sobic010G143600 Sobic003G184666 Sobic003G184666 Sobic005G078700--Sobic003G184666 Sobic001G268300 Sobic001G268300 Sobic005G078700--Sobic001G268300 Sobic002G362200 Sobic002G362200 Sobic005G078700--Sobic002G362200 Sobic006G262800 Sobic006G262800 Sobic005G078700--Sobic006G262800 Sobic004G282500 Sobic004G282500 Sobic005G078700--Sobic004G282500 Sobic009G154900 Sobic009G154900 Sobic005G078700--Sobic009G154900 Sobic005G078700--Sobic009G105400 Sobic001G194700--Sobic007G038700 Sobic001G194700--Sobic008G123200 Sobic001G194700--Sobic002G251800 Sobic001G194700--Sobic001G448000 Sobic001G194700--Sobic003G325900 Sobic001G194700--Sobic003G336500 Sobic010G106100 Sobic010G106100 Sobic001G194700--Sobic010G106100 Sobic009G200000 Sobic009G200000 Sobic001G194700--Sobic009G200000 Sobic001G194700--Sobic010G175000 Sobic003G153900--Sobic003G351900 Sobic003G153900--Sobic008G169400 Sobic002G021200 Sobic002G021200 Sobic003G153900--Sobic002G021200 Sobic006G281900 Sobic006G281900 Sobic003G153900--Sobic006G281900 Sobic001G079900 Sobic001G079900 Sobic003G153900--Sobic001G079900 Sobic002G370400 Sobic002G370400 Sobic003G153900--Sobic002G370400 Sobic001G369800 Sobic001G369800 Sobic003G153900--Sobic001G369800 Sobic009G212100 Sobic009G212100 Sobic003G153900--Sobic009G212100 Sobic003G153900--Sobic006G008300 Sobic008G179000 Sobic008G179000 Sobic008G031200--Sobic008G179000 Sobic008G031200--Sobic001G268300 Sobic010G252700 Sobic010G252700 Sobic008G031200--Sobic010G252700 Sobic008G031200--Sobic002G362200 Sobic003G397100 Sobic003G397100 Sobic008G031200--Sobic003G397100 Sobic008G031200--Sobic003G153900 Sobic008G031200--Sobic002G084400 Sobic001G537400 Sobic001G537400 Sobic008G031200--Sobic001G537400 Sobic002G123600 Sobic002G123600 Sobic008G031200--Sobic002G123600
Octagon: transcription factors


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