Gene annotation
Transcriptome id Sobic.002G251800.4,Sobic.002G251800.3,Sobic.002G251800.2,Sobic.002G251800.5
Synonym MEF18, Sb02g028755
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
tetratricopeptide-like helical, putative, expressed
UniProt A0A1W0W5R7 , A0A1W0W5W5 , A0A1W0W5U7
Pfam PF01246 PF13812 PF01535 PF13041 PF13812 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF400
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G19020 : mitochondrial editing factor 18
RAP-DB (Rice) LOC_Os01g29430.2,LOC_Os01g29430.1 : tetratricopeptide-like helical, putative, expressed
MaizeGDB (Corn) Zm00025a047491
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
2 Sobic.007G038700 zinc finger, C3HC4 type domain containing protein, expressed K11985: TRAIP, TRAF-interacting protein
3 Sobic.002G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
4 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3
5 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A
6 Sobic.008G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
7 Sobic.006G085900 pentatricopeptide, putative, expressed -
8 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
9 Sobic.001G049800 DDT domain containing protein, putative, expressed -
10 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
11 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
12 Sobic.006G069100 pentatricopeptide, putative, expressed -
13 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
14 Sobic.001G212200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@LOI1, putative, expressed -
15 Sobic.002G389200 pentatricopeptide repeat domain containing protein, putative, expressed -
16 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
17 Sobic.009G238700 EMB2744, putative, expressed -
18 Sobic.010G099300 - K03501: gidB, 16S rRNA (guanine527-N7)-methyltransferase
19 Sobic.003G412000 tRNA methyltransferase, putative, expressed K03256: TRM6, tRNA (adenine58-N1)-methyltransferase non-catalytic subunit
20 Sobic.001G149100 vegetative storage protein, putative, expressed -


Gene co-expression network
sample Sobic002G251800 Sobic002G251800 Sobic005G028300 Sobic005G028300 Sobic002G251800--Sobic005G028300 Sobic007G038700 Sobic007G038700 Sobic002G251800--Sobic007G038700 Sobic002G084400 Sobic002G084400 Sobic002G251800--Sobic002G084400 Sobic006G271900 Sobic006G271900 Sobic002G251800--Sobic006G271900 Sobic001G040600 Sobic001G040600 Sobic002G251800--Sobic001G040600 Sobic008G099900 Sobic008G099900 Sobic002G251800--Sobic008G099900 Sobic006G085900 Sobic006G085900 Sobic002G251800--Sobic006G085900 Sobic007G060600 Sobic007G060600 Sobic002G251800--Sobic007G060600 Sobic001G049800 Sobic001G049800 Sobic002G251800--Sobic001G049800 Sobic002G389200 Sobic002G389200 Sobic005G028300--Sobic002G389200 Sobic003G051500 Sobic003G051500 Sobic005G028300--Sobic003G051500 Sobic005G028300--Sobic002G251800 Sobic001G001200 Sobic001G001200 Sobic005G028300--Sobic001G001200 Sobic003G419800 Sobic003G419800 Sobic005G028300--Sobic003G419800 Sobic003G014700 Sobic003G014700 Sobic005G028300--Sobic003G014700 Sobic001G391101 Sobic001G391101 Sobic005G028300--Sobic001G391101 Sobic005G028300--Sobic002G084400 Sobic010G083900 Sobic010G083900 Sobic005G028300--Sobic010G083900 Sobic007G038700--Sobic002G251800 Sobic010G277200 Sobic010G277200 Sobic007G038700--Sobic010G277200 Sobic008G123200 Sobic008G123200 Sobic007G038700--Sobic008G123200 Sobic003G336500 Sobic003G336500 Sobic007G038700--Sobic003G336500 Sobic009G105400 Sobic009G105400 Sobic007G038700--Sobic009G105400 Sobic005G078700 Sobic005G078700 Sobic007G038700--Sobic005G078700 Sobic001G194700 Sobic001G194700 Sobic007G038700--Sobic001G194700 Sobic003G153900 Sobic003G153900 Sobic007G038700--Sobic003G153900 Sobic008G031200 Sobic008G031200 Sobic007G038700--Sobic008G031200 Sobic010G232700 Sobic010G232700 Sobic002G084400--Sobic010G232700 Sobic008G041000 Sobic008G041000 Sobic002G084400--Sobic008G041000 Sobic002G084400--Sobic006G085900 Sobic002G084400--Sobic002G251800 Sobic002G084400--Sobic005G028300 Sobic006G069100 Sobic006G069100 Sobic002G084400--Sobic006G069100 Sobic002G084400--Sobic008G031200 Sobic008G171500 Sobic008G171500 Sobic002G084400--Sobic008G171500 Sobic003G067201 Sobic003G067201 Sobic002G084400--Sobic003G067201 Sobic006G271900--Sobic001G040600 Sobic006G271900--Sobic007G060600 Sobic009G253200 Sobic009G253200 Sobic006G271900--Sobic009G253200 Sobic006G271900--Sobic001G049800 Sobic006G111200 Sobic006G111200 Sobic006G271900--Sobic006G111200 Sobic006G271900--Sobic002G251800 Sobic001G480400 Sobic001G480400 Sobic006G271900--Sobic001G480400 Sobic006G271900--Sobic005G028300 Sobic001G081300 Sobic001G081300 Sobic006G271900--Sobic001G081300 Sobic001G040600--Sobic007G060600 Sobic001G040600--Sobic006G271900 Sobic010G099300 Sobic010G099300 Sobic001G040600--Sobic010G099300 Sobic001G040600--Sobic003G336500 Sobic001G040600--Sobic001G049800 Sobic001G040600--Sobic003G051500 Sobic008G100400 Sobic008G100400 Sobic001G040600--Sobic008G100400 Sobic001G040600--Sobic001G081300 Sobic001G040600--Sobic002G251800 Sobic005G210700 Sobic005G210700 Sobic008G099900--Sobic005G210700 Sobic008G099900--Sobic006G085900 Sobic009G155400 Sobic009G155400 Sobic008G099900--Sobic009G155400 Sobic008G099900--Sobic002G251800 Sobic004G217900 Sobic004G217900 Sobic008G099900--Sobic004G217900 Sobic006G109400 Sobic006G109400 Sobic008G099900--Sobic006G109400 Sobic009G116400 Sobic009G116400 Sobic008G099900--Sobic009G116400 Sobic007G179600 Sobic007G179600 Sobic008G099900--Sobic007G179600 Sobic008G099900--Sobic006G271900 Sobic004G241000 Sobic004G241000 Sobic006G085900--Sobic004G241000 Sobic010G068900 Sobic010G068900 Sobic006G085900--Sobic010G068900 Sobic006G085900--Sobic009G155400 Sobic006G085900--Sobic006G069100 Sobic002G172500 Sobic002G172500 Sobic006G085900--Sobic002G172500 Sobic006G085900--Sobic008G099900 Sobic006G085900--Sobic002G084400 Sobic001G436600 Sobic001G436600 Sobic006G085900--Sobic001G436600 Sobic006G085900--Sobic005G210700 Sobic007G060600--Sobic001G049800 Sobic007G060600--Sobic001G040600 Sobic007G059700 Sobic007G059700 Sobic007G060600--Sobic007G059700 Sobic004G151000 Sobic004G151000 Sobic007G060600--Sobic004G151000 Sobic004G027300 Sobic004G027300 Sobic007G060600--Sobic004G027300 Sobic006G273900 Sobic006G273900 Sobic007G060600--Sobic006G273900 Sobic009G238700 Sobic009G238700 Sobic007G060600--Sobic009G238700 Sobic007G060600--Sobic006G111200 Sobic009G191500 Sobic009G191500 Sobic007G060600--Sobic009G191500 Sobic001G049800--Sobic007G060600 Sobic001G049800--Sobic004G151000 Sobic001G049800--Sobic004G027300 Sobic001G544300 Sobic001G544300 Sobic001G049800--Sobic001G544300 Sobic010G224700 Sobic010G224700 Sobic001G049800--Sobic010G224700 Sobic001G049800--Sobic006G111200 Sobic006G059500 Sobic006G059500 Sobic001G049800--Sobic006G059500 Sobic002G378100 Sobic002G378100 Sobic001G049800--Sobic002G378100 Sobic001G049800--Sobic010G083900
Octagon: transcription factors


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