Gene annotation
Transcriptome id Sobic.001G212200.1
Synonym Sb01g018760, MEF11, LOI1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
LOI1, putative, expressed
UniProt A0A1Z5S6P0
Pfam PF12854 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF507
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G14850 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os10g34720.1 : LOI1, putative, expressed
MaizeGDB (Corn) Zm00025a017508
Brachypodium PNT67607 , PNT67606 , PNT67605
Barley HORVU1Hr1G043480.2 , HORVU1Hr1G043480.1
Wheat TraesCS1B02G179700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G251800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
2 Sobic.006G069100 pentatricopeptide, putative, expressed -
3 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A
4 Sobic.001G149100 vegetative storage protein, putative, expressed -
5 Sobic.002G167400 pentatricopeptide, putative, expressed -
6 Sobic.010G099300 - K03501: gidB, 16S rRNA (guanine527-N7)-methyltransferase
7 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -
8 Sobic.009G238700 EMB2744, putative, expressed -
9 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
10 Sobic.002G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
11 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
12 Sobic.003G299200 pentatricopeptide, putative, expressed -
13 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
14 Sobic.001G408300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
16 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
17 Sobic.006G109400 pentatricopeptide, putative, expressed -
18 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
19 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
20 Sobic.001G391101 - -


Gene co-expression network
sample Sobic001G212200 Sobic001G212200 Sobic002G251800 Sobic002G251800 Sobic001G212200--Sobic002G251800 Sobic006G069100 Sobic006G069100 Sobic001G212200--Sobic006G069100 Sobic001G040600 Sobic001G040600 Sobic001G212200--Sobic001G040600 Sobic001G149100 Sobic001G149100 Sobic001G212200--Sobic001G149100 Sobic002G167400 Sobic002G167400 Sobic001G212200--Sobic002G167400 Sobic010G099300 Sobic010G099300 Sobic001G212200--Sobic010G099300 Sobic003G322200 Sobic003G322200 Sobic001G212200--Sobic003G322200 Sobic009G238700 Sobic009G238700 Sobic001G212200--Sobic009G238700 Sobic001G347100 Sobic001G347100 Sobic001G212200--Sobic001G347100 Sobic005G028300 Sobic005G028300 Sobic002G251800--Sobic005G028300 Sobic007G038700 Sobic007G038700 Sobic002G251800--Sobic007G038700 Sobic002G084400 Sobic002G084400 Sobic002G251800--Sobic002G084400 Sobic006G271900 Sobic006G271900 Sobic002G251800--Sobic006G271900 Sobic002G251800--Sobic001G040600 Sobic008G099900 Sobic008G099900 Sobic002G251800--Sobic008G099900 Sobic006G085900 Sobic006G085900 Sobic002G251800--Sobic006G085900 Sobic007G060600 Sobic007G060600 Sobic002G251800--Sobic007G060600 Sobic001G049800 Sobic001G049800 Sobic002G251800--Sobic001G049800 Sobic004G241000 Sobic004G241000 Sobic006G069100--Sobic004G241000 Sobic004G256900 Sobic004G256900 Sobic006G069100--Sobic004G256900 Sobic010G068900 Sobic010G068900 Sobic006G069100--Sobic010G068900 Sobic010G190900 Sobic010G190900 Sobic006G069100--Sobic010G190900 Sobic006G069100--Sobic006G085900 Sobic009G155400 Sobic009G155400 Sobic006G069100--Sobic009G155400 Sobic008G163400 Sobic008G163400 Sobic006G069100--Sobic008G163400 Sobic009G116400 Sobic009G116400 Sobic006G069100--Sobic009G116400 Sobic004G025100 Sobic004G025100 Sobic006G069100--Sobic004G025100 Sobic001G040600--Sobic007G060600 Sobic001G040600--Sobic006G271900 Sobic001G040600--Sobic010G099300 Sobic003G336500 Sobic003G336500 Sobic001G040600--Sobic003G336500 Sobic001G040600--Sobic001G049800 Sobic003G051500 Sobic003G051500 Sobic001G040600--Sobic003G051500 Sobic008G100400 Sobic008G100400 Sobic001G040600--Sobic008G100400 Sobic001G081300 Sobic001G081300 Sobic001G040600--Sobic001G081300 Sobic001G040600--Sobic002G251800 Sobic001G149100--Sobic001G347100 Sobic003G299200 Sobic003G299200 Sobic001G149100--Sobic003G299200 Sobic010G252700 Sobic010G252700 Sobic001G149100--Sobic010G252700 Sobic008G179000 Sobic008G179000 Sobic001G149100--Sobic008G179000 Sobic001G149100--Sobic004G241000 Sobic001G149100--Sobic008G163400 Sobic003G239000 Sobic003G239000 Sobic001G149100--Sobic003G239000 Sobic001G149100--Sobic006G069100 Sobic002G267600 Sobic002G267600 Sobic001G149100--Sobic002G267600 Sobic002G167400--Sobic001G212200 Sobic003G203100 Sobic003G203100 Sobic002G167400--Sobic003G203100 Sobic002G167400--Sobic003G051500 Sobic004G217900 Sobic004G217900 Sobic002G167400--Sobic004G217900 Sobic002G167400--Sobic005G028300 Sobic001G001200 Sobic001G001200 Sobic002G167400--Sobic001G001200 Sobic009G136200 Sobic009G136200 Sobic002G167400--Sobic009G136200 Sobic002G042900 Sobic002G042900 Sobic002G167400--Sobic002G042900 Sobic001G391101 Sobic001G391101 Sobic002G167400--Sobic001G391101 Sobic010G099300--Sobic001G040600 Sobic007G182600 Sobic007G182600 Sobic010G099300--Sobic007G182600 Sobic010G099300--Sobic007G060600 Sobic010G099300--Sobic001G081300 Sobic001G437801 Sobic001G437801 Sobic010G099300--Sobic001G437801 Sobic010G099300--Sobic001G049800 Sobic010G099300--Sobic003G051500 Sobic001G395300 Sobic001G395300 Sobic010G099300--Sobic001G395300 Sobic010G099300--Sobic006G271900 Sobic001G372800 Sobic001G372800 Sobic003G322200--Sobic001G372800 Sobic001G401400 Sobic001G401400 Sobic003G322200--Sobic001G401400 Sobic003G123200 Sobic003G123200 Sobic003G322200--Sobic003G123200 Sobic003G412000 Sobic003G412000 Sobic003G322200--Sobic003G412000 Sobic010G038800 Sobic010G038800 Sobic003G322200--Sobic010G038800 Sobic006G198600 Sobic006G198600 Sobic003G322200--Sobic006G198600 Sobic003G322200--Sobic003G336500 Sobic002G344500 Sobic002G344500 Sobic003G322200--Sobic002G344500 Sobic001G483800 Sobic001G483800 Sobic003G322200--Sobic001G483800 Sobic009G238700--Sobic007G060600 Sobic009G238700--Sobic001G081300 Sobic009G238700--Sobic001G347100 Sobic009G238700--Sobic001G040600 Sobic009G238700--Sobic001G049800 Sobic007G179600 Sobic007G179600 Sobic009G238700--Sobic007G179600 Sobic009G238700--Sobic006G271900 Sobic009G238700--Sobic003G299200 Sobic003G352100 Sobic003G352100 Sobic009G238700--Sobic003G352100 Sobic001G347100--Sobic001G149100 Sobic001G347100--Sobic001G391101 Sobic001G347100--Sobic001G081300 Sobic001G347100--Sobic009G238700 Sobic001G347100--Sobic007G179600 Sobic001G347100--Sobic003G299200 Sobic001G347100--Sobic004G241000 Sobic001G347100--Sobic006G069100 Sobic001G347100--Sobic009G155400
Octagon: transcription factors


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