Gene annotation
Transcriptome id Sobic.002G167400.1
Synonym
Functional annotation pentatricopeptide, putative, expressed
UniProt C5X9P0
Pfam PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF701
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G02750 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os09g24240.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a046446
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G212200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@LOI1, putative, expressed -
2 Sobic.003G203100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
4 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
5 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
6 Sobic.001G001200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.009G136200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.002G042900 pentatricopeptide, putative, expressed -
9 Sobic.001G391101 - -
10 Sobic.007G179600 pentatricopeptide, putative, expressed -
11 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
12 Sobic.002G251800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
13 Sobic.005G210700 pentatricopeptide repeat domain containing protein, putative, expressed -
14 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A
15 Sobic.003G014700 pentatricopeptide, putative, expressed -
16 Sobic.003G419800 pentatricopeptide repeat protein PPR1106-17, putative, expressed -
17 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
18 Sobic.002G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
19 Sobic.001G049800 DDT domain containing protein, putative, expressed -
20 Sobic.010G232700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic002G167400 Sobic002G167400 Sobic001G212200 Sobic001G212200 Sobic002G167400--Sobic001G212200 Sobic003G203100 Sobic003G203100 Sobic002G167400--Sobic003G203100 Sobic003G051500 Sobic003G051500 Sobic002G167400--Sobic003G051500 Sobic004G217900 Sobic004G217900 Sobic002G167400--Sobic004G217900 Sobic005G028300 Sobic005G028300 Sobic002G167400--Sobic005G028300 Sobic001G001200 Sobic001G001200 Sobic002G167400--Sobic001G001200 Sobic009G136200 Sobic009G136200 Sobic002G167400--Sobic009G136200 Sobic002G042900 Sobic002G042900 Sobic002G167400--Sobic002G042900 Sobic001G391101 Sobic001G391101 Sobic002G167400--Sobic001G391101 Sobic002G251800 Sobic002G251800 Sobic001G212200--Sobic002G251800 Sobic006G069100 Sobic006G069100 Sobic001G212200--Sobic006G069100 Sobic001G040600 Sobic001G040600 Sobic001G212200--Sobic001G040600 Sobic001G149100 Sobic001G149100 Sobic001G212200--Sobic001G149100 Sobic001G212200--Sobic002G167400 Sobic010G099300 Sobic010G099300 Sobic001G212200--Sobic010G099300 Sobic003G322200 Sobic003G322200 Sobic001G212200--Sobic003G322200 Sobic009G238700 Sobic009G238700 Sobic001G212200--Sobic009G238700 Sobic001G347100 Sobic001G347100 Sobic001G212200--Sobic001G347100 Sobic010G232700 Sobic010G232700 Sobic003G203100--Sobic010G232700 Sobic008G041000 Sobic008G041000 Sobic003G203100--Sobic008G041000 Sobic006G085900 Sobic006G085900 Sobic003G203100--Sobic006G085900 Sobic002G084400 Sobic002G084400 Sobic003G203100--Sobic002G084400 Sobic008G009300 Sobic008G009300 Sobic003G203100--Sobic008G009300 Sobic002G389200 Sobic002G389200 Sobic003G203100--Sobic002G389200 Sobic001G490700 Sobic001G490700 Sobic003G203100--Sobic001G490700 Sobic003G203100--Sobic002G167400 Sobic005G210700 Sobic005G210700 Sobic003G203100--Sobic005G210700 Sobic003G051500--Sobic001G391101 Sobic003G051500--Sobic001G001200 Sobic003G051500--Sobic005G028300 Sobic003G051500--Sobic001G040600 Sobic001G081300 Sobic001G081300 Sobic003G051500--Sobic001G081300 Sobic003G419800 Sobic003G419800 Sobic003G051500--Sobic003G419800 Sobic007G182600 Sobic007G182600 Sobic003G051500--Sobic007G182600 Sobic003G051500--Sobic010G099300 Sobic003G051500--Sobic004G217900 Sobic009G155400 Sobic009G155400 Sobic004G217900--Sobic009G155400 Sobic008G163400 Sobic008G163400 Sobic004G217900--Sobic008G163400 Sobic009G116400 Sobic009G116400 Sobic004G217900--Sobic009G116400 Sobic001G187800 Sobic001G187800 Sobic004G217900--Sobic001G187800 Sobic008G099900 Sobic008G099900 Sobic004G217900--Sobic008G099900 Sobic004G217900--Sobic003G051500 Sobic004G241000 Sobic004G241000 Sobic004G217900--Sobic004G241000 Sobic010G190900 Sobic010G190900 Sobic004G217900--Sobic010G190900 Sobic004G217900--Sobic001G149100 Sobic005G028300--Sobic002G389200 Sobic005G028300--Sobic003G051500 Sobic005G028300--Sobic002G251800 Sobic005G028300--Sobic001G001200 Sobic005G028300--Sobic003G419800 Sobic003G014700 Sobic003G014700 Sobic005G028300--Sobic003G014700 Sobic005G028300--Sobic001G391101 Sobic005G028300--Sobic002G084400 Sobic010G083900 Sobic010G083900 Sobic005G028300--Sobic010G083900 Sobic001G001200--Sobic003G051500 Sobic001G001200--Sobic005G028300 Sobic001G001200--Sobic003G419800 Sobic001G001200--Sobic001G391101 Sobic001G390900 Sobic001G390900 Sobic001G001200--Sobic001G390900 Sobic003G183900 Sobic003G183900 Sobic001G001200--Sobic003G183900 Sobic001G001200--Sobic001G081300 Sobic007G179600 Sobic007G179600 Sobic001G001200--Sobic007G179600 Sobic001G001200--Sobic010G083900 Sobic009G136200--Sobic007G179600 Sobic001G412200 Sobic001G412200 Sobic009G136200--Sobic001G412200 Sobic009G136200--Sobic002G042900 Sobic009G136200--Sobic001G001200 Sobic002G385200 Sobic002G385200 Sobic009G136200--Sobic002G385200 Sobic009G136200--Sobic003G051500 Sobic004G250100 Sobic004G250100 Sobic009G136200--Sobic004G250100 Sobic009G136200--Sobic002G167400 Sobic009G136200--Sobic003G203100 Sobic002G042900--Sobic004G217900 Sobic005G123900 Sobic005G123900 Sobic002G042900--Sobic005G123900 Sobic002G042900--Sobic001G001200 Sobic002G042900--Sobic009G136200 Sobic003G292932 Sobic003G292932 Sobic002G042900--Sobic003G292932 Sobic006G099501 Sobic006G099501 Sobic002G042900--Sobic006G099501 Sobic002G042900--Sobic007G179600 Sobic002G042900--Sobic003G051500 Sobic002G042900--Sobic003G419800 Sobic001G391101--Sobic001G081300 Sobic001G391101--Sobic001G347100 Sobic001G391101--Sobic003G051500 Sobic001G391101--Sobic005G028300 Sobic001G391101--Sobic007G179600 Sobic001G391101--Sobic003G419800 Sobic001G391101--Sobic003G014700 Sobic001G391101--Sobic001G001200 Sobic001G391101--Sobic004G241000
Octagon: transcription factors


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