Gene annotation
Transcriptome id Sobic.002G042900.1
Synonym Sb02g003670
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1W0W270
Pfam PF12854 PF13041 PF14432 PF01535
Panther DB PTHR24015 PTHR24015:SF509
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G62890 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os07g06960.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a045079
Brachypodium KQK20788 , KQK20787 , PNT77007
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
2 Sobic.005G123900 ATP binding protein, putative, expressed K17592: sacsin
3 Sobic.001G001200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
4 Sobic.009G136200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
5 Sobic.003G292932 - -
6 Sobic.006G099501 - -
7 Sobic.007G179600 pentatricopeptide, putative, expressed -
8 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
9 Sobic.003G419800 pentatricopeptide repeat protein PPR1106-17, putative, expressed -
10 Sobic.002G385200 pentatricopeptide, putative, expressed -
11 Sobic.002G240900 pentatricopeptide, putative, expressed -
12 Sobic.005G011000 Rf1, mitochondrial precursor, putative, expressed -
13 Sobic.005G210700 pentatricopeptide repeat domain containing protein, putative, expressed -
14 Sobic.008G041000 expressed protein -
15 Sobic.002G167400 pentatricopeptide, putative, expressed -
16 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
17 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
18 Sobic.008G066900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
19 Sobic.003G237100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CRR2, putative, expressed -
20 Sobic.003G203100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic002G042900 Sobic002G042900 Sobic004G217900 Sobic004G217900 Sobic002G042900--Sobic004G217900 Sobic005G123900 Sobic005G123900 Sobic002G042900--Sobic005G123900 Sobic001G001200 Sobic001G001200 Sobic002G042900--Sobic001G001200 Sobic009G136200 Sobic009G136200 Sobic002G042900--Sobic009G136200 Sobic003G292932 Sobic003G292932 Sobic002G042900--Sobic003G292932 Sobic006G099501 Sobic006G099501 Sobic002G042900--Sobic006G099501 Sobic007G179600 Sobic007G179600 Sobic002G042900--Sobic007G179600 Sobic003G051500 Sobic003G051500 Sobic002G042900--Sobic003G051500 Sobic003G419800 Sobic003G419800 Sobic002G042900--Sobic003G419800 Sobic009G155400 Sobic009G155400 Sobic004G217900--Sobic009G155400 Sobic008G163400 Sobic008G163400 Sobic004G217900--Sobic008G163400 Sobic009G116400 Sobic009G116400 Sobic004G217900--Sobic009G116400 Sobic001G187800 Sobic001G187800 Sobic004G217900--Sobic001G187800 Sobic008G099900 Sobic008G099900 Sobic004G217900--Sobic008G099900 Sobic004G217900--Sobic003G051500 Sobic004G241000 Sobic004G241000 Sobic004G217900--Sobic004G241000 Sobic010G190900 Sobic010G190900 Sobic004G217900--Sobic010G190900 Sobic001G149100 Sobic001G149100 Sobic004G217900--Sobic001G149100 Sobic009G260200 Sobic009G260200 Sobic005G123900--Sobic009G260200 Sobic005G148400 Sobic005G148400 Sobic005G123900--Sobic005G148400 Sobic010G161900 Sobic010G161900 Sobic005G123900--Sobic010G161900 Sobic006G201600 Sobic006G201600 Sobic005G123900--Sobic006G201600 Sobic008G066900 Sobic008G066900 Sobic005G123900--Sobic008G066900 Sobic007G187400 Sobic007G187400 Sobic005G123900--Sobic007G187400 Sobic005G204100 Sobic005G204100 Sobic005G123900--Sobic005G204100 Sobic003G156766 Sobic003G156766 Sobic005G123900--Sobic003G156766 Sobic005G123900--Sobic006G099501 Sobic001G001200--Sobic003G051500 Sobic005G028300 Sobic005G028300 Sobic001G001200--Sobic005G028300 Sobic001G001200--Sobic003G419800 Sobic001G391101 Sobic001G391101 Sobic001G001200--Sobic001G391101 Sobic001G390900 Sobic001G390900 Sobic001G001200--Sobic001G390900 Sobic003G183900 Sobic003G183900 Sobic001G001200--Sobic003G183900 Sobic001G081300 Sobic001G081300 Sobic001G001200--Sobic001G081300 Sobic001G001200--Sobic007G179600 Sobic010G083900 Sobic010G083900 Sobic001G001200--Sobic010G083900 Sobic009G136200--Sobic007G179600 Sobic001G412200 Sobic001G412200 Sobic009G136200--Sobic001G412200 Sobic009G136200--Sobic002G042900 Sobic009G136200--Sobic001G001200 Sobic002G385200 Sobic002G385200 Sobic009G136200--Sobic002G385200 Sobic009G136200--Sobic003G051500 Sobic004G250100 Sobic004G250100 Sobic009G136200--Sobic004G250100 Sobic002G167400 Sobic002G167400 Sobic009G136200--Sobic002G167400 Sobic003G203100 Sobic003G203100 Sobic009G136200--Sobic003G203100 Sobic003G292932--Sobic002G042900 Sobic003G420000 Sobic003G420000 Sobic003G292932--Sobic003G420000 Sobic010G087000 Sobic010G087000 Sobic003G292932--Sobic010G087000 Sobic003G292932--Sobic004G217900 Sobic002G059800 Sobic002G059800 Sobic003G292932--Sobic002G059800 Sobic002G142600 Sobic002G142600 Sobic003G292932--Sobic002G142600 Sobic008G152300 Sobic008G152300 Sobic003G292932--Sobic008G152300 Sobic010G153000 Sobic010G153000 Sobic003G292932--Sobic010G153000 Sobic004G149800 Sobic004G149800 Sobic003G292932--Sobic004G149800 Sobic005G043400 Sobic005G043400 Sobic006G099501--Sobic005G043400 Sobic006G099501--Sobic002G059800 Sobic010G143400 Sobic010G143400 Sobic006G099501--Sobic010G143400 Sobic002G128400 Sobic002G128400 Sobic006G099501--Sobic002G128400 Sobic008G106400 Sobic008G106400 Sobic006G099501--Sobic008G106400 Sobic005G148500 Sobic005G148500 Sobic006G099501--Sobic005G148500 Sobic005G085100 Sobic005G085100 Sobic006G099501--Sobic005G085100 Sobic001G164200 Sobic001G164200 Sobic006G099501--Sobic001G164200 Sobic002G094500 Sobic002G094500 Sobic006G099501--Sobic002G094500 Sobic007G179600--Sobic001G081300 Sobic001G347100 Sobic001G347100 Sobic007G179600--Sobic001G347100 Sobic007G179600--Sobic003G419800 Sobic007G179600--Sobic001G391101 Sobic005G210700 Sobic005G210700 Sobic007G179600--Sobic005G210700 Sobic009G238700 Sobic009G238700 Sobic007G179600--Sobic009G238700 Sobic007G179600--Sobic008G066900 Sobic007G179600--Sobic008G099900 Sobic007G210801 Sobic007G210801 Sobic007G179600--Sobic007G210801 Sobic003G051500--Sobic001G391101 Sobic003G051500--Sobic001G001200 Sobic003G051500--Sobic005G028300 Sobic001G040600 Sobic001G040600 Sobic003G051500--Sobic001G040600 Sobic003G051500--Sobic001G081300 Sobic003G051500--Sobic003G419800 Sobic007G182600 Sobic007G182600 Sobic003G051500--Sobic007G182600 Sobic010G099300 Sobic010G099300 Sobic003G051500--Sobic010G099300 Sobic003G051500--Sobic004G217900 Sobic003G419800--Sobic005G028300 Sobic003G419800--Sobic001G001200 Sobic003G419800--Sobic007G179600 Sobic003G419800--Sobic001G081300 Sobic003G419800--Sobic003G051500 Sobic003G419800--Sobic001G391101 Sobic003G419800--Sobic001G390900 Sobic003G014700 Sobic003G014700 Sobic003G419800--Sobic003G014700 Sobic003G419800--Sobic007G182600
Octagon: transcription factors


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