Gene annotation
Transcriptome id Sobic.008G041000.1
Synonym Sb08g003540
Functional annotation expressed protein
UniProt C5YS50
Pfam PF12854 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF723
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G04780 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os12g06070.1 : expressed protein
MaizeGDB (Corn) Zm00025a053928
Brachypodium KQJ92190
Barley HORVU5Hr1G040610.2 , HORVU5Hr1G040610.3 , HORVU5Hr1G040610.6 , HORVU5Hr1G040610.4 , HORVU5Hr1G040610.5
Wheat TraesCS5D02G134600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
2 Sobic.010G232700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.006G085900 pentatricopeptide, putative, expressed -
4 Sobic.003G203100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
5 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
6 Sobic.002G251800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
7 Sobic.002G389200 pentatricopeptide repeat domain containing protein, putative, expressed -
8 Sobic.009G134400 pentatricopeptide repeat protein PPR986-12, putative, expressed -
9 Sobic.006G069100 pentatricopeptide, putative, expressed -
10 Sobic.002G240900 pentatricopeptide, putative, expressed -
11 Sobic.006G073600 pentatricopeptide, putative, expressed -
12 Sobic.008G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
13 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
14 Sobic.004G025100 pentatricopeptide repeat-containing protein, putative, expressed -
15 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
16 Sobic.001G122200 zinc finger protein, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
17 Sobic.004G241000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
18 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
19 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
20 Sobic.003G067201 - -


Gene co-expression network
sample Sobic008G041000 Sobic008G041000 Sobic002G084400 Sobic002G084400 Sobic008G041000--Sobic002G084400 Sobic010G232700 Sobic010G232700 Sobic008G041000--Sobic010G232700 Sobic006G085900 Sobic006G085900 Sobic008G041000--Sobic006G085900 Sobic003G203100 Sobic003G203100 Sobic008G041000--Sobic003G203100 Sobic005G028300 Sobic005G028300 Sobic008G041000--Sobic005G028300 Sobic002G251800 Sobic002G251800 Sobic008G041000--Sobic002G251800 Sobic002G389200 Sobic002G389200 Sobic008G041000--Sobic002G389200 Sobic009G134400 Sobic009G134400 Sobic008G041000--Sobic009G134400 Sobic006G069100 Sobic006G069100 Sobic008G041000--Sobic006G069100 Sobic002G084400--Sobic010G232700 Sobic002G084400--Sobic008G041000 Sobic002G084400--Sobic006G085900 Sobic002G084400--Sobic002G251800 Sobic002G084400--Sobic005G028300 Sobic002G084400--Sobic006G069100 Sobic008G031200 Sobic008G031200 Sobic002G084400--Sobic008G031200 Sobic008G171500 Sobic008G171500 Sobic002G084400--Sobic008G171500 Sobic003G067201 Sobic003G067201 Sobic002G084400--Sobic003G067201 Sobic010G232700--Sobic002G084400 Sobic010G232700--Sobic008G041000 Sobic010G232700--Sobic006G085900 Sobic010G232700--Sobic008G171500 Sobic010G232700--Sobic003G203100 Sobic004G241000 Sobic004G241000 Sobic010G232700--Sobic004G241000 Sobic010G232700--Sobic006G069100 Sobic010G232700--Sobic005G028300 Sobic004G256900 Sobic004G256900 Sobic010G232700--Sobic004G256900 Sobic006G085900--Sobic004G241000 Sobic010G068900 Sobic010G068900 Sobic006G085900--Sobic010G068900 Sobic009G155400 Sobic009G155400 Sobic006G085900--Sobic009G155400 Sobic006G085900--Sobic006G069100 Sobic002G172500 Sobic002G172500 Sobic006G085900--Sobic002G172500 Sobic008G099900 Sobic008G099900 Sobic006G085900--Sobic008G099900 Sobic006G085900--Sobic002G084400 Sobic001G436600 Sobic001G436600 Sobic006G085900--Sobic001G436600 Sobic005G210700 Sobic005G210700 Sobic006G085900--Sobic005G210700 Sobic003G203100--Sobic010G232700 Sobic003G203100--Sobic008G041000 Sobic003G203100--Sobic006G085900 Sobic003G203100--Sobic002G084400 Sobic008G009300 Sobic008G009300 Sobic003G203100--Sobic008G009300 Sobic003G203100--Sobic002G389200 Sobic001G490700 Sobic001G490700 Sobic003G203100--Sobic001G490700 Sobic002G167400 Sobic002G167400 Sobic003G203100--Sobic002G167400 Sobic003G203100--Sobic005G210700 Sobic005G028300--Sobic002G389200 Sobic003G051500 Sobic003G051500 Sobic005G028300--Sobic003G051500 Sobic005G028300--Sobic002G251800 Sobic001G001200 Sobic001G001200 Sobic005G028300--Sobic001G001200 Sobic003G419800 Sobic003G419800 Sobic005G028300--Sobic003G419800 Sobic003G014700 Sobic003G014700 Sobic005G028300--Sobic003G014700 Sobic001G391101 Sobic001G391101 Sobic005G028300--Sobic001G391101 Sobic005G028300--Sobic002G084400 Sobic010G083900 Sobic010G083900 Sobic005G028300--Sobic010G083900 Sobic002G251800--Sobic005G028300 Sobic007G038700 Sobic007G038700 Sobic002G251800--Sobic007G038700 Sobic002G251800--Sobic002G084400 Sobic006G271900 Sobic006G271900 Sobic002G251800--Sobic006G271900 Sobic001G040600 Sobic001G040600 Sobic002G251800--Sobic001G040600 Sobic002G251800--Sobic008G099900 Sobic002G251800--Sobic006G085900 Sobic007G060600 Sobic007G060600 Sobic002G251800--Sobic007G060600 Sobic001G049800 Sobic001G049800 Sobic002G251800--Sobic001G049800 Sobic002G389200--Sobic005G028300 Sobic002G389200--Sobic009G155400 Sobic002G240900 Sobic002G240900 Sobic002G389200--Sobic002G240900 Sobic002G389200--Sobic006G069100 Sobic002G389200--Sobic006G085900 Sobic002G389200--Sobic003G419800 Sobic002G389200--Sobic002G251800 Sobic005G011000 Sobic005G011000 Sobic002G389200--Sobic005G011000 Sobic007G179600 Sobic007G179600 Sobic002G389200--Sobic007G179600 Sobic004G025100 Sobic004G025100 Sobic009G134400--Sobic004G025100 Sobic002G429400 Sobic002G429400 Sobic009G134400--Sobic002G429400 Sobic009G134400--Sobic008G041000 Sobic009G134400--Sobic002G389200 Sobic009G134400--Sobic005G028300 Sobic001G347100 Sobic001G347100 Sobic009G134400--Sobic001G347100 Sobic005G059400 Sobic005G059400 Sobic009G134400--Sobic005G059400 Sobic004G033300 Sobic004G033300 Sobic009G134400--Sobic004G033300 Sobic002G385200 Sobic002G385200 Sobic009G134400--Sobic002G385200 Sobic006G069100--Sobic004G241000 Sobic006G069100--Sobic004G256900 Sobic006G069100--Sobic010G068900 Sobic010G190900 Sobic010G190900 Sobic006G069100--Sobic010G190900 Sobic006G069100--Sobic006G085900 Sobic006G069100--Sobic009G155400 Sobic008G163400 Sobic008G163400 Sobic006G069100--Sobic008G163400 Sobic009G116400 Sobic009G116400 Sobic006G069100--Sobic009G116400 Sobic006G069100--Sobic004G025100
Octagon: transcription factors


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