Gene annotation
Transcriptome id Sobic.006G073600.2,Sobic.006G073600.1,Sobic.006G073600.3
Synonym
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1B6PKR9
Pfam PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF139
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G37570 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os04g33840.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a011490 , Zm00025a049163 , Zm00025a039521
Brachypodium KQJ82537
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
2 Sobic.008G041000 expressed protein -
3 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
4 Sobic.010G232700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
5 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
6 Sobic.006G085900 pentatricopeptide, putative, expressed -
7 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
8 Sobic.010G032300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
9 Sobic.004G241000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
10 Sobic.006G085800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
11 Sobic.003G067201 - -
12 Sobic.008G163400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
13 Sobic.004G342300 expressed protein -
14 Sobic.008G170600 pentatricopeptide, putative, expressed -
15 Sobic.008G031200 pentatricopeptide, putative, expressed -
16 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
17 Sobic.002G389200 pentatricopeptide repeat domain containing protein, putative, expressed -
18 Sobic.001G436600 pentatricopeptide, putative, expressed -
19 Sobic.003G235700 single-stranded DNA-binding protein, putative, expressed K03111: single-strand DNA-binding protein
20 Sobic.003G237100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CRR2, putative, expressed -


Gene co-expression network
sample Sobic006G073600 Sobic006G073600 Sobic002G084400 Sobic002G084400 Sobic006G073600--Sobic002G084400 Sobic008G041000 Sobic008G041000 Sobic006G073600--Sobic008G041000 Sobic004G217900 Sobic004G217900 Sobic006G073600--Sobic004G217900 Sobic010G232700 Sobic010G232700 Sobic006G073600--Sobic010G232700 Sobic005G028300 Sobic005G028300 Sobic006G073600--Sobic005G028300 Sobic006G085900 Sobic006G085900 Sobic006G073600--Sobic006G085900 Sobic003G051500 Sobic003G051500 Sobic006G073600--Sobic003G051500 Sobic010G032300 Sobic010G032300 Sobic006G073600--Sobic010G032300 Sobic004G241000 Sobic004G241000 Sobic006G073600--Sobic004G241000 Sobic002G084400--Sobic010G232700 Sobic002G084400--Sobic008G041000 Sobic002G084400--Sobic006G085900 Sobic002G251800 Sobic002G251800 Sobic002G084400--Sobic002G251800 Sobic002G084400--Sobic005G028300 Sobic006G069100 Sobic006G069100 Sobic002G084400--Sobic006G069100 Sobic008G031200 Sobic008G031200 Sobic002G084400--Sobic008G031200 Sobic008G171500 Sobic008G171500 Sobic002G084400--Sobic008G171500 Sobic003G067201 Sobic003G067201 Sobic002G084400--Sobic003G067201 Sobic008G041000--Sobic002G084400 Sobic008G041000--Sobic010G232700 Sobic008G041000--Sobic006G085900 Sobic003G203100 Sobic003G203100 Sobic008G041000--Sobic003G203100 Sobic008G041000--Sobic005G028300 Sobic008G041000--Sobic002G251800 Sobic002G389200 Sobic002G389200 Sobic008G041000--Sobic002G389200 Sobic009G134400 Sobic009G134400 Sobic008G041000--Sobic009G134400 Sobic008G041000--Sobic006G069100 Sobic009G155400 Sobic009G155400 Sobic004G217900--Sobic009G155400 Sobic008G163400 Sobic008G163400 Sobic004G217900--Sobic008G163400 Sobic009G116400 Sobic009G116400 Sobic004G217900--Sobic009G116400 Sobic001G187800 Sobic001G187800 Sobic004G217900--Sobic001G187800 Sobic008G099900 Sobic008G099900 Sobic004G217900--Sobic008G099900 Sobic004G217900--Sobic003G051500 Sobic004G217900--Sobic004G241000 Sobic010G190900 Sobic010G190900 Sobic004G217900--Sobic010G190900 Sobic001G149100 Sobic001G149100 Sobic004G217900--Sobic001G149100 Sobic010G232700--Sobic002G084400 Sobic010G232700--Sobic008G041000 Sobic010G232700--Sobic006G085900 Sobic010G232700--Sobic008G171500 Sobic010G232700--Sobic003G203100 Sobic010G232700--Sobic004G241000 Sobic010G232700--Sobic006G069100 Sobic010G232700--Sobic005G028300 Sobic004G256900 Sobic004G256900 Sobic010G232700--Sobic004G256900 Sobic005G028300--Sobic002G389200 Sobic005G028300--Sobic003G051500 Sobic005G028300--Sobic002G251800 Sobic001G001200 Sobic001G001200 Sobic005G028300--Sobic001G001200 Sobic003G419800 Sobic003G419800 Sobic005G028300--Sobic003G419800 Sobic003G014700 Sobic003G014700 Sobic005G028300--Sobic003G014700 Sobic001G391101 Sobic001G391101 Sobic005G028300--Sobic001G391101 Sobic005G028300--Sobic002G084400 Sobic010G083900 Sobic010G083900 Sobic005G028300--Sobic010G083900 Sobic006G085900--Sobic004G241000 Sobic010G068900 Sobic010G068900 Sobic006G085900--Sobic010G068900 Sobic006G085900--Sobic009G155400 Sobic006G085900--Sobic006G069100 Sobic002G172500 Sobic002G172500 Sobic006G085900--Sobic002G172500 Sobic006G085900--Sobic008G099900 Sobic006G085900--Sobic002G084400 Sobic001G436600 Sobic001G436600 Sobic006G085900--Sobic001G436600 Sobic005G210700 Sobic005G210700 Sobic006G085900--Sobic005G210700 Sobic003G051500--Sobic001G391101 Sobic003G051500--Sobic001G001200 Sobic003G051500--Sobic005G028300 Sobic001G040600 Sobic001G040600 Sobic003G051500--Sobic001G040600 Sobic001G081300 Sobic001G081300 Sobic003G051500--Sobic001G081300 Sobic003G051500--Sobic003G419800 Sobic007G182600 Sobic007G182600 Sobic003G051500--Sobic007G182600 Sobic010G099300 Sobic010G099300 Sobic003G051500--Sobic010G099300 Sobic003G051500--Sobic004G217900 Sobic004G342300 Sobic004G342300 Sobic010G032300--Sobic004G342300 Sobic006G140400 Sobic006G140400 Sobic010G032300--Sobic006G140400 Sobic006G274100 Sobic006G274100 Sobic010G032300--Sobic006G274100 Sobic010G224700 Sobic010G224700 Sobic010G032300--Sobic010G224700 Sobic006G059500 Sobic006G059500 Sobic010G032300--Sobic006G059500 Sobic002G132600 Sobic002G132600 Sobic010G032300--Sobic002G132600 Sobic009G211200 Sobic009G211200 Sobic010G032300--Sobic009G211200 Sobic003G259600 Sobic003G259600 Sobic010G032300--Sobic003G259600 Sobic010G032300--Sobic005G028300 Sobic004G241000--Sobic008G163400 Sobic004G241000--Sobic004G256900 Sobic004G241000--Sobic006G069100 Sobic004G241000--Sobic010G190900 Sobic004G241000--Sobic010G068900 Sobic003G239000 Sobic003G239000 Sobic004G241000--Sobic003G239000 Sobic004G241000--Sobic006G085900 Sobic004G241000--Sobic002G172500 Sobic004G241000--Sobic009G155400
Octagon: transcription factors


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