Gene annotation
Transcriptome id Sobic.004G241000.1
Synonym Sb04g028180
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt C5XYV5
Pfam PF14432 PF13812 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF423
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G68930 : pentatricopeptide (PPR) repeat-containing protein
RAP-DB (Rice) LOC_Os02g01610.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a022016
Brachypodium KQJ92818 , PNT65684
Barley HORVU6Hr1G004120.7 , HORVU6Hr1G004120.6 , HORVU6Hr1G004120.5 , HORVU6Hr1G004120.2 , HORVU6Hr1G004120.1 , HORVU6Hr1G004120.8 , HORVU6Hr1G004120.19 , HORVU6Hr1G004120.18 , HORVU6Hr1G004120.17 , HORVU6Hr1G004120.16 , HORVU6Hr1G004120.15 , HORVU6Hr1G004120.14 , HORVU6Hr1G004120.13 , HORVU6Hr1G004120.12 , HORVU6Hr1G004120.10 , HORVU6Hr1G004120.20 , HORVU6Hr1G004120.21
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G163400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
2 Sobic.004G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
3 Sobic.006G069100 pentatricopeptide, putative, expressed -
4 Sobic.010G190900 pentatricopeptide, putative, expressed -
5 Sobic.010G068900 glutamate receptor 2.6 precursor, putative, expressed K05387: glutamate receptor, ionotropic, plant
6 Sobic.003G239000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
7 Sobic.006G085900 pentatricopeptide, putative, expressed -
8 Sobic.002G172500 tetratricopeptide-like helical, putative, expressed -
9 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
10 Sobic.001G149100 vegetative storage protein, putative, expressed -
11 Sobic.006G262800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
12 Sobic.009G253101 - -
13 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
14 Sobic.001G436600 pentatricopeptide, putative, expressed -
15 Sobic.009G116400 pentatricopeptide, putative, expressed -
16 Sobic.003G184300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.008G179000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
18 Sobic.006G262700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phytosulfokine receptor precursor, putative, expressed -
19 Sobic.001G242300 expressed protein -
20 Sobic.007G087900 Rf1, mitochondrial precursor, putative, expressed -


Gene co-expression network
sample Sobic004G241000 Sobic004G241000 Sobic008G163400 Sobic008G163400 Sobic004G241000--Sobic008G163400 Sobic004G256900 Sobic004G256900 Sobic004G241000--Sobic004G256900 Sobic006G069100 Sobic006G069100 Sobic004G241000--Sobic006G069100 Sobic010G190900 Sobic010G190900 Sobic004G241000--Sobic010G190900 Sobic010G068900 Sobic010G068900 Sobic004G241000--Sobic010G068900 Sobic003G239000 Sobic003G239000 Sobic004G241000--Sobic003G239000 Sobic006G085900 Sobic006G085900 Sobic004G241000--Sobic006G085900 Sobic002G172500 Sobic002G172500 Sobic004G241000--Sobic002G172500 Sobic009G155400 Sobic009G155400 Sobic004G241000--Sobic009G155400 Sobic008G163400--Sobic003G239000 Sobic008G163400--Sobic004G241000 Sobic008G163400--Sobic009G155400 Sobic009G116400 Sobic009G116400 Sobic008G163400--Sobic009G116400 Sobic008G163400--Sobic004G256900 Sobic006G262800 Sobic006G262800 Sobic008G163400--Sobic006G262800 Sobic001G122200 Sobic001G122200 Sobic008G163400--Sobic001G122200 Sobic002G267600 Sobic002G267600 Sobic008G163400--Sobic002G267600 Sobic001G149100 Sobic001G149100 Sobic008G163400--Sobic001G149100 Sobic003G184300 Sobic003G184300 Sobic004G256900--Sobic003G184300 Sobic004G256900--Sobic004G241000 Sobic004G256900--Sobic010G068900 Sobic004G256900--Sobic002G172500 Sobic004G256900--Sobic006G069100 Sobic004G256900--Sobic006G262800 Sobic004G256900--Sobic010G190900 Sobic001G478900 Sobic001G478900 Sobic004G256900--Sobic001G478900 Sobic004G256900--Sobic008G163400 Sobic006G069100--Sobic004G241000 Sobic006G069100--Sobic004G256900 Sobic006G069100--Sobic010G068900 Sobic006G069100--Sobic010G190900 Sobic006G069100--Sobic006G085900 Sobic006G069100--Sobic009G155400 Sobic006G069100--Sobic008G163400 Sobic006G069100--Sobic009G116400 Sobic004G025100 Sobic004G025100 Sobic006G069100--Sobic004G025100 Sobic010G190900--Sobic010G068900 Sobic010G190900--Sobic004G241000 Sobic010G190900--Sobic006G069100 Sobic010G190900--Sobic004G256900 Sobic009G253101 Sobic009G253101 Sobic010G190900--Sobic009G253101 Sobic010G190900--Sobic009G116400 Sobic010G190900--Sobic009G155400 Sobic007G087900 Sobic007G087900 Sobic010G190900--Sobic007G087900 Sobic010G190900--Sobic002G172500 Sobic010G068900--Sobic002G172500 Sobic010G068900--Sobic004G256900 Sobic010G068900--Sobic006G262800 Sobic010G068900--Sobic010G190900 Sobic010G068900--Sobic004G241000 Sobic010G068900--Sobic006G069100 Sobic010G068900--Sobic006G085900 Sobic010G068900--Sobic003G184300 Sobic010G068900--Sobic001G478900 Sobic003G239000--Sobic008G163400 Sobic003G239000--Sobic004G241000 Sobic003G239000--Sobic002G267600 Sobic003G239000--Sobic001G149100 Sobic003G239000--Sobic009G155400 Sobic008G179000 Sobic008G179000 Sobic003G239000--Sobic008G179000 Sobic003G239000--Sobic006G069100 Sobic003G239000--Sobic004G256900 Sobic008G066900 Sobic008G066900 Sobic003G239000--Sobic008G066900 Sobic006G085900--Sobic004G241000 Sobic006G085900--Sobic010G068900 Sobic006G085900--Sobic009G155400 Sobic006G085900--Sobic006G069100 Sobic006G085900--Sobic002G172500 Sobic008G099900 Sobic008G099900 Sobic006G085900--Sobic008G099900 Sobic002G084400 Sobic002G084400 Sobic006G085900--Sobic002G084400 Sobic001G436600 Sobic001G436600 Sobic006G085900--Sobic001G436600 Sobic005G210700 Sobic005G210700 Sobic006G085900--Sobic005G210700 Sobic002G172500--Sobic010G068900 Sobic008G082800 Sobic008G082800 Sobic002G172500--Sobic008G082800 Sobic002G172500--Sobic004G256900 Sobic002G172500--Sobic006G262800 Sobic002G172500--Sobic004G241000 Sobic002G172500--Sobic006G085900 Sobic002G172500--Sobic009G155400 Sobic002G172500--Sobic003G184300 Sobic002G172500--Sobic008G163400 Sobic009G155400--Sobic009G116400 Sobic009G155400--Sobic008G163400 Sobic009G155400--Sobic004G241000 Sobic009G155400--Sobic006G085900 Sobic004G217900 Sobic004G217900 Sobic009G155400--Sobic004G217900 Sobic009G155400--Sobic006G069100 Sobic009G155400--Sobic002G172500 Sobic006G262700 Sobic006G262700 Sobic009G155400--Sobic006G262700 Sobic009G155400--Sobic005G210700
Octagon: transcription factors


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