Gene annotation
Transcriptome id Sobic.009G134400.1
Synonym
Functional annotation pentatricopeptide repeat protein PPR986-12, putative, expressed
UniProt A0A1Z5R381
Pfam PF14432 PF12854 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF481
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G22070 : pentatricopeptide (PPR) repeat-containing protein
RAP-DB (Rice) LOC_Os02g05720.1 : pentatricopeptide repeat protein PPR986-12, putative, expressed
MaizeGDB (Corn) Zm00025a044299
Brachypodium PNT60632 , PNT60631 , PNT60630
Barley HORVU1Hr1G082120.9 , HORVU1Hr1G082120.4 , HORVU1Hr1G082120.5 , HORVU1Hr1G082120.2 , HORVU1Hr1G082120.8 , HORVU1Hr1G082120.6 , HORVU1Hr1G082120.7 , HORVU1Hr1G082120.3 , HORVU1Hr1G082120.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G025100 pentatricopeptide repeat-containing protein, putative, expressed -
2 Sobic.002G429400 PPR repeat containing protein, expressed -
3 Sobic.008G041000 expressed protein -
4 Sobic.002G389200 pentatricopeptide repeat domain containing protein, putative, expressed -
5 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
6 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
7 Sobic.005G059400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized PPR-repeat protein, putative, expressed -
8 Sobic.004G033300 DNA polymerase V, putative, expressed K02331: POL5, DNA polymerase phi
9 Sobic.002G385200 pentatricopeptide, putative, expressed -
10 Sobic.005G210700 pentatricopeptide repeat domain containing protein, putative, expressed -
11 Sobic.002G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
12 Sobic.008G150200 PPR repeat domain containing protein, putative, expressed -
13 Sobic.004G266300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
14 Sobic.005G127300 expressed protein K14289: exportin-5
15 Sobic.008G000800 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
16 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
17 Sobic.008G066900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
18 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
19 Sobic.005G011000 Rf1, mitochondrial precursor, putative, expressed -
20 Sobic.006G085900 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic009G134400 Sobic009G134400 Sobic004G025100 Sobic004G025100 Sobic009G134400--Sobic004G025100 Sobic002G429400 Sobic002G429400 Sobic009G134400--Sobic002G429400 Sobic008G041000 Sobic008G041000 Sobic009G134400--Sobic008G041000 Sobic002G389200 Sobic002G389200 Sobic009G134400--Sobic002G389200 Sobic005G028300 Sobic005G028300 Sobic009G134400--Sobic005G028300 Sobic001G347100 Sobic001G347100 Sobic009G134400--Sobic001G347100 Sobic005G059400 Sobic005G059400 Sobic009G134400--Sobic005G059400 Sobic004G033300 Sobic004G033300 Sobic009G134400--Sobic004G033300 Sobic002G385200 Sobic002G385200 Sobic009G134400--Sobic002G385200 Sobic006G069100 Sobic006G069100 Sobic004G025100--Sobic006G069100 Sobic010G256000 Sobic010G256000 Sobic004G025100--Sobic010G256000 Sobic009G155400 Sobic009G155400 Sobic004G025100--Sobic009G155400 Sobic002G183300 Sobic002G183300 Sobic004G025100--Sobic002G183300 Sobic002G084400 Sobic002G084400 Sobic004G025100--Sobic002G084400 Sobic004G025100--Sobic005G028300 Sobic005G210700 Sobic005G210700 Sobic004G025100--Sobic005G210700 Sobic009G116400 Sobic009G116400 Sobic004G025100--Sobic009G116400 Sobic006G085900 Sobic006G085900 Sobic004G025100--Sobic006G085900 Sobic004G289400 Sobic004G289400 Sobic002G429400--Sobic004G289400 Sobic006G180700 Sobic006G180700 Sobic002G429400--Sobic006G180700 Sobic003G006400 Sobic003G006400 Sobic002G429400--Sobic003G006400 Sobic001G413800 Sobic001G413800 Sobic002G429400--Sobic001G413800 Sobic003G014700 Sobic003G014700 Sobic002G429400--Sobic003G014700 Sobic008G098600 Sobic008G098600 Sobic002G429400--Sobic008G098600 Sobic002G429400--Sobic005G028300 Sobic001G334100 Sobic001G334100 Sobic002G429400--Sobic001G334100 Sobic001G122200 Sobic001G122200 Sobic002G429400--Sobic001G122200 Sobic008G041000--Sobic002G084400 Sobic010G232700 Sobic010G232700 Sobic008G041000--Sobic010G232700 Sobic008G041000--Sobic006G085900 Sobic003G203100 Sobic003G203100 Sobic008G041000--Sobic003G203100 Sobic008G041000--Sobic005G028300 Sobic002G251800 Sobic002G251800 Sobic008G041000--Sobic002G251800 Sobic008G041000--Sobic002G389200 Sobic008G041000--Sobic009G134400 Sobic008G041000--Sobic006G069100 Sobic002G389200--Sobic005G028300 Sobic002G389200--Sobic009G155400 Sobic002G240900 Sobic002G240900 Sobic002G389200--Sobic002G240900 Sobic002G389200--Sobic006G069100 Sobic002G389200--Sobic006G085900 Sobic003G419800 Sobic003G419800 Sobic002G389200--Sobic003G419800 Sobic002G389200--Sobic002G251800 Sobic005G011000 Sobic005G011000 Sobic002G389200--Sobic005G011000 Sobic007G179600 Sobic007G179600 Sobic002G389200--Sobic007G179600 Sobic005G028300--Sobic002G389200 Sobic003G051500 Sobic003G051500 Sobic005G028300--Sobic003G051500 Sobic005G028300--Sobic002G251800 Sobic001G001200 Sobic001G001200 Sobic005G028300--Sobic001G001200 Sobic005G028300--Sobic003G419800 Sobic005G028300--Sobic003G014700 Sobic001G391101 Sobic001G391101 Sobic005G028300--Sobic001G391101 Sobic005G028300--Sobic002G084400 Sobic010G083900 Sobic010G083900 Sobic005G028300--Sobic010G083900 Sobic001G149100 Sobic001G149100 Sobic001G347100--Sobic001G149100 Sobic001G347100--Sobic001G391101 Sobic001G081300 Sobic001G081300 Sobic001G347100--Sobic001G081300 Sobic009G238700 Sobic009G238700 Sobic001G347100--Sobic009G238700 Sobic001G347100--Sobic007G179600 Sobic003G299200 Sobic003G299200 Sobic001G347100--Sobic003G299200 Sobic004G241000 Sobic004G241000 Sobic001G347100--Sobic004G241000 Sobic001G347100--Sobic006G069100 Sobic001G347100--Sobic009G155400 Sobic005G059400--Sobic001G334100 Sobic003G259600 Sobic003G259600 Sobic005G059400--Sobic003G259600 Sobic002G218700 Sobic002G218700 Sobic005G059400--Sobic002G218700 Sobic005G059400--Sobic001G347100 Sobic005G059400--Sobic006G180700 Sobic005G199200 Sobic005G199200 Sobic005G059400--Sobic005G199200 Sobic004G036700 Sobic004G036700 Sobic005G059400--Sobic004G036700 Sobic002G132600 Sobic002G132600 Sobic005G059400--Sobic002G132600 Sobic003G184400 Sobic003G184400 Sobic005G059400--Sobic003G184400 Sobic008G178500 Sobic008G178500 Sobic004G033300--Sobic008G178500 Sobic005G110523 Sobic005G110523 Sobic004G033300--Sobic005G110523 Sobic003G258900 Sobic003G258900 Sobic004G033300--Sobic003G258900 Sobic007G129401 Sobic007G129401 Sobic004G033300--Sobic007G129401 Sobic009G004700 Sobic009G004700 Sobic004G033300--Sobic009G004700 Sobic007G031800 Sobic007G031800 Sobic004G033300--Sobic007G031800 Sobic005G173366 Sobic005G173366 Sobic004G033300--Sobic005G173366 Sobic008G150200 Sobic008G150200 Sobic004G033300--Sobic008G150200 Sobic002G331000 Sobic002G331000 Sobic004G033300--Sobic002G331000 Sobic002G385200--Sobic005G210700 Sobic005G148500 Sobic005G148500 Sobic002G385200--Sobic005G148500 Sobic001G182300 Sobic001G182300 Sobic002G385200--Sobic001G182300 Sobic005G148400 Sobic005G148400 Sobic002G385200--Sobic005G148400 Sobic006G099501 Sobic006G099501 Sobic002G385200--Sobic006G099501 Sobic002G385200--Sobic001G001200 Sobic008G066900 Sobic008G066900 Sobic002G385200--Sobic008G066900 Sobic002G385200--Sobic007G179600 Sobic010G143400 Sobic010G143400 Sobic002G385200--Sobic010G143400
Octagon: transcription factors


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