Gene annotation
Transcriptome id Sobic.008G150200.1
Synonym Sb08g020000
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5YQY3
Pfam PF13812 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF378
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G43820 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os02g20160.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a025222
Brachypodium KQJ94607
Barley HORVU5Hr1G111970.10 , HORVU5Hr1G111970.12 , HORVU5Hr1G111970.13 , HORVU5Hr1G111970.14 , HORVU5Hr1G111970.15 , HORVU5Hr1G111970.16 , HORVU5Hr1G111970.17 , HORVU5Hr1G111970.18 , HORVU5Hr1G111970.19 , HORVU5Hr1G111970.25 , HORVU5Hr1G111970.27 , HORVU5Hr1G111970.26 , HORVU5Hr1G111970.21 , HORVU5Hr1G111970.20 , HORVU5Hr1G111970.23 , HORVU5Hr1G111970.22 , HORVU5Hr1G111970.2 , HORVU5Hr1G111970.3 , HORVU5Hr1G111970.1 , HORVU5Hr1G111970.6 , HORVU5Hr1G111970.7 , HORVU5Hr1G111970.4 , HORVU5Hr1G111970.5 , HORVU5Hr1G111970.8 , HORVU5Hr1G111970.9 , HORVU5Hr1G111970.24
Wheat TraesCS5A02G470800 , TraesCS5B02G483400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G305400 metallothionein family protein, expressed -
2 Sobic.002G060500 OsFBX237 - F-box domain containing protein, expressed -
3 Sobic.002G221200 zinc knuckle domain containing protein, expressed -
4 Sobic.001G261480 - K01489: cdd, cytidine deaminase
5 Sobic.004G200866 - -
6 Sobic.001G240400 ENT domain containing protein, expressed -
7 Sobic.005G142200 expressed protein -
8 Sobic.004G121000 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
9 Sobic.009G101600 ulp1 protease family, C-terminal catalytic domain containing protein, expressed -
10 Sobic.008G142000 expressed protein -
11 Sobic.005G043800 transporter family protein, putative, expressed -
12 Sobic.003G366850 - -
13 Sobic.004G092300 expressed protein -
14 Sobic.002G224450 - -
15 Sobic.003G436900 OsFBX178 - F-box domain containing protein, expressed -
16 Sobic.K010000 RNA recognition motif containing protein, putative, expressed -
17 Sobic.002G056100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Leucine Rich Repeat family protein, expressed -
18 Sobic.007G168800 cytokinin inducible protein, putative, expressed -
19 Sobic.008G036500 - -
20 Sobic.005G061100 - -


Gene co-expression network
sample Sobic008G150200 Sobic008G150200 Sobic001G305400 Sobic001G305400 Sobic008G150200--Sobic001G305400 Sobic002G060500 Sobic002G060500 Sobic008G150200--Sobic002G060500 Sobic002G221200 Sobic002G221200 Sobic008G150200--Sobic002G221200 Sobic001G261480 Sobic001G261480 Sobic008G150200--Sobic001G261480 Sobic004G200866 Sobic004G200866 Sobic008G150200--Sobic004G200866 Sobic001G240400 Sobic001G240400 Sobic008G150200--Sobic001G240400 Sobic005G142200 Sobic005G142200 Sobic008G150200--Sobic005G142200 Sobic004G121000 Sobic004G121000 Sobic008G150200--Sobic004G121000 Sobic009G101600 Sobic009G101600 Sobic008G150200--Sobic009G101600 Sobic001G305400--Sobic002G221200 Sobic008G091900 Sobic008G091900 Sobic001G305400--Sobic008G091900 Sobic001G305400--Sobic001G240400 Sobic005G117801 Sobic005G117801 Sobic001G305400--Sobic005G117801 Sobic002G056100 Sobic002G056100 Sobic001G305400--Sobic002G056100 Sobic009G209800 Sobic009G209800 Sobic001G305400--Sobic009G209800 Sobic001G305400--Sobic005G142200 Sobic001G305400--Sobic002G060500 Sobic001G305400--Sobic001G261480 Sobic009G026400 Sobic009G026400 Sobic002G060500--Sobic009G026400 Sobic002G060500--Sobic009G101600 Sobic002G060500--Sobic005G142200 SobicK010000 SobicK010000 Sobic002G060500--SobicK010000 Sobic004G196500 Sobic004G196500 Sobic002G060500--Sobic004G196500 Sobic002G060500--Sobic001G305400 Sobic002G060500--Sobic002G221200 Sobic005G043400 Sobic005G043400 Sobic002G060500--Sobic005G043400 Sobic007G059300 Sobic007G059300 Sobic002G060500--Sobic007G059300 Sobic002G221200--Sobic001G305400 Sobic002G221200--Sobic008G091900 Sobic002G221200--Sobic001G240400 Sobic002G221200--Sobic005G117801 Sobic001G253100 Sobic001G253100 Sobic002G221200--Sobic001G253100 Sobic002G221200--Sobic009G209800 Sobic008G036500 Sobic008G036500 Sobic002G221200--Sobic008G036500 Sobic002G062300 Sobic002G062300 Sobic002G221200--Sobic002G062300 Sobic003G031750 Sobic003G031750 Sobic002G221200--Sobic003G031750 Sobic001G261480--Sobic001G305400 Sobic001G261480--Sobic002G221200 Sobic001G261480--Sobic001G240400 Sobic001G261480--Sobic004G121000 Sobic001G261480--Sobic004G200866 Sobic003G366850 Sobic003G366850 Sobic001G261480--Sobic003G366850 Sobic001G261480--Sobic005G117801 Sobic001G261480--Sobic009G209800 Sobic001G261480--Sobic003G031750 Sobic004G200866--SobicK010000 Sobic004G200866--Sobic005G142200 Sobic004G200866--Sobic009G101600 Sobic004G200866--Sobic004G121000 Sobic004G200866--Sobic001G305400 Sobic008G142000 Sobic008G142000 Sobic004G200866--Sobic008G142000 Sobic004G200866--Sobic002G060500 Sobic004G200866--Sobic002G221200 Sobic004G200866--Sobic001G261480 Sobic001G240400--Sobic009G209800 Sobic001G240400--Sobic002G221200 Sobic001G240400--Sobic001G253100 Sobic001G240400--Sobic005G117801 Sobic001G240400--Sobic002G056100 Sobic001G240400--Sobic008G091900 Sobic008G049701 Sobic008G049701 Sobic001G240400--Sobic008G049701 Sobic001G240400--Sobic001G305400 Sobic005G221425 Sobic005G221425 Sobic001G240400--Sobic005G221425 Sobic005G142200--Sobic009G101600 Sobic005G142200--Sobic004G121000 Sobic003G436900 Sobic003G436900 Sobic005G142200--Sobic003G436900 Sobic005G142200--Sobic002G060500 Sobic005G142200--Sobic004G200866 Sobic005G142200--Sobic009G026400 Sobic005G142200--Sobic001G305400 Sobic005G142200--Sobic002G221200 Sobic005G142200--SobicK010000 Sobic004G121000--Sobic005G142200 Sobic004G121000--Sobic003G436900 Sobic004G121000--Sobic001G240400 Sobic002G224450 Sobic002G224450 Sobic004G121000--Sobic002G224450 Sobic004G121000--Sobic004G200866 Sobic004G121000--Sobic001G305400 Sobic004G121000--Sobic005G221425 Sobic004G317600 Sobic004G317600 Sobic004G121000--Sobic004G317600 Sobic004G121000--Sobic002G221200 Sobic009G101600--Sobic005G142200 Sobic009G101600--Sobic009G026400 Sobic009G101600--Sobic002G060500 Sobic009G101600--SobicK010000 Sobic009G101600--Sobic004G200866 Sobic005G054300 Sobic005G054300 Sobic009G101600--Sobic005G054300 Sobic009G101600--Sobic004G196500 Sobic009G101600--Sobic005G043400 Sobic005G054600 Sobic005G054600 Sobic009G101600--Sobic005G054600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.