Gene annotation
Transcriptome id Sobic.005G011000.1
Synonym Sb05g000986
Functional annotation Rf1, mitochondrial precursor, putative, expressed
UniProt C5Y357
Pfam PF12854 PF13041
Panther DB PTHR24015 PTHR24015:SF302
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G63130 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os10g35240.2 : Rf1, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.005G011000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3
2 Sobic.009G116400 pentatricopeptide, putative, expressed -
3 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase
4 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
5 Sobic.005G210700 pentatricopeptide repeat domain containing protein, putative, expressed -
6 Sobic.001G187800 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
7 Sobic.003G419800 pentatricopeptide repeat protein PPR1106-17, putative, expressed -
8 Sobic.002G389200 pentatricopeptide repeat domain containing protein, putative, expressed -
9 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
10 Sobic.007G077700 expressed protein -
11 Sobic.001G001200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
12 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
13 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
14 Sobic.003G412100 aspartokinase 3, chloroplast precursor, putative, expressed K00928: aspartate kinase
15 Sobic.010G092801 - -
16 Sobic.001G391101 - -
17 Sobic.003G128000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
18 Sobic.007G179600 pentatricopeptide, putative, expressed -
19 Sobic.003G184400 jmjC domain-containing protein 4, putative, expressed -
20 Sobic.004G025100 pentatricopeptide repeat-containing protein, putative, expressed -


Gene co-expression network
sample Sobic005G011000 Sobic005G011000 Sobic006G271900 Sobic006G271900 Sobic005G011000--Sobic006G271900 Sobic009G116400 Sobic009G116400 Sobic005G011000--Sobic009G116400 Sobic004G036700 Sobic004G036700 Sobic005G011000--Sobic004G036700 Sobic001G347100 Sobic001G347100 Sobic005G011000--Sobic001G347100 Sobic005G210700 Sobic005G210700 Sobic005G011000--Sobic005G210700 Sobic001G187800 Sobic001G187800 Sobic005G011000--Sobic001G187800 Sobic003G419800 Sobic003G419800 Sobic005G011000--Sobic003G419800 Sobic002G389200 Sobic002G389200 Sobic005G011000--Sobic002G389200 Sobic005G028300 Sobic005G028300 Sobic005G011000--Sobic005G028300 Sobic001G040600 Sobic001G040600 Sobic006G271900--Sobic001G040600 Sobic007G060600 Sobic007G060600 Sobic006G271900--Sobic007G060600 Sobic009G253200 Sobic009G253200 Sobic006G271900--Sobic009G253200 Sobic001G049800 Sobic001G049800 Sobic006G271900--Sobic001G049800 Sobic006G111200 Sobic006G111200 Sobic006G271900--Sobic006G111200 Sobic002G251800 Sobic002G251800 Sobic006G271900--Sobic002G251800 Sobic001G480400 Sobic001G480400 Sobic006G271900--Sobic001G480400 Sobic006G271900--Sobic005G028300 Sobic001G081300 Sobic001G081300 Sobic006G271900--Sobic001G081300 Sobic009G155400 Sobic009G155400 Sobic009G116400--Sobic009G155400 Sobic006G262700 Sobic006G262700 Sobic009G116400--Sobic006G262700 Sobic008G163400 Sobic008G163400 Sobic009G116400--Sobic008G163400 Sobic010G190900 Sobic010G190900 Sobic009G116400--Sobic010G190900 Sobic007G087900 Sobic007G087900 Sobic009G116400--Sobic007G087900 Sobic006G069100 Sobic006G069100 Sobic009G116400--Sobic006G069100 Sobic009G116400--Sobic005G210700 Sobic004G346200 Sobic004G346200 Sobic009G116400--Sobic004G346200 Sobic004G241000 Sobic004G241000 Sobic009G116400--Sobic004G241000 Sobic005G028100 Sobic005G028100 Sobic004G036700--Sobic005G028100 Sobic001G401400 Sobic001G401400 Sobic004G036700--Sobic001G401400 Sobic001G422500 Sobic001G422500 Sobic004G036700--Sobic001G422500 Sobic006G225400 Sobic006G225400 Sobic004G036700--Sobic006G225400 Sobic008G163500 Sobic008G163500 Sobic004G036700--Sobic008G163500 Sobic003G123200 Sobic003G123200 Sobic004G036700--Sobic003G123200 Sobic003G425100 Sobic003G425100 Sobic004G036700--Sobic003G425100 Sobic006G198600 Sobic006G198600 Sobic004G036700--Sobic006G198600 Sobic010G205900 Sobic010G205900 Sobic004G036700--Sobic010G205900 Sobic001G149100 Sobic001G149100 Sobic001G347100--Sobic001G149100 Sobic001G391101 Sobic001G391101 Sobic001G347100--Sobic001G391101 Sobic001G347100--Sobic001G081300 Sobic009G238700 Sobic009G238700 Sobic001G347100--Sobic009G238700 Sobic007G179600 Sobic007G179600 Sobic001G347100--Sobic007G179600 Sobic003G299200 Sobic003G299200 Sobic001G347100--Sobic003G299200 Sobic001G347100--Sobic004G241000 Sobic001G347100--Sobic006G069100 Sobic001G347100--Sobic009G155400 Sobic008G099900 Sobic008G099900 Sobic005G210700--Sobic008G099900 Sobic005G210700--Sobic009G155400 Sobic005G210700--Sobic009G116400 Sobic006G085900 Sobic006G085900 Sobic005G210700--Sobic006G085900 Sobic005G210700--Sobic007G179600 Sobic005G210700--Sobic001G347100 Sobic008G066900 Sobic008G066900 Sobic005G210700--Sobic008G066900 Sobic005G210700--Sobic006G069100 Sobic005G210700--Sobic005G011000 Sobic001G009400 Sobic001G009400 Sobic001G187800--Sobic001G009400 Sobic001G187800--Sobic009G155400 Sobic001G448100 Sobic001G448100 Sobic001G187800--Sobic001G448100 Sobic001G187800--Sobic006G111200 Sobic004G217900 Sobic004G217900 Sobic001G187800--Sobic004G217900 Sobic001G187800--Sobic006G262700 Sobic009G108400 Sobic009G108400 Sobic001G187800--Sobic009G108400 Sobic001G187800--Sobic001G347100 Sobic001G187800--Sobic005G011000 Sobic003G419800--Sobic005G028300 Sobic001G001200 Sobic001G001200 Sobic003G419800--Sobic001G001200 Sobic003G419800--Sobic007G179600 Sobic003G419800--Sobic001G081300 Sobic003G051500 Sobic003G051500 Sobic003G419800--Sobic003G051500 Sobic003G419800--Sobic001G391101 Sobic001G390900 Sobic001G390900 Sobic003G419800--Sobic001G390900 Sobic003G014700 Sobic003G014700 Sobic003G419800--Sobic003G014700 Sobic007G182600 Sobic007G182600 Sobic003G419800--Sobic007G182600 Sobic002G389200--Sobic005G028300 Sobic002G389200--Sobic009G155400 Sobic002G240900 Sobic002G240900 Sobic002G389200--Sobic002G240900 Sobic002G389200--Sobic006G069100 Sobic002G389200--Sobic006G085900 Sobic002G389200--Sobic003G419800 Sobic002G389200--Sobic002G251800 Sobic002G389200--Sobic005G011000 Sobic002G389200--Sobic007G179600 Sobic005G028300--Sobic002G389200 Sobic005G028300--Sobic003G051500 Sobic005G028300--Sobic002G251800 Sobic005G028300--Sobic001G001200 Sobic005G028300--Sobic003G419800 Sobic005G028300--Sobic003G014700 Sobic005G028300--Sobic001G391101 Sobic002G084400 Sobic002G084400 Sobic005G028300--Sobic002G084400 Sobic010G083900 Sobic010G083900 Sobic005G028300--Sobic010G083900
Octagon: transcription factors


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