Gene annotation
Transcriptome id Sobic.006G271900.1
Synonym MSH3, ATMSH3
Functional annotation DNA mismatch repair protein MSH3, putative, expressed
UniProt C5YAM8
Pfam PF05188 PF05190 PF01624 PF05192 PF00488
Panther DB PTHR11361 PTHR11361:SF34
NCBI CDD -
KEGG Orthology K08736; DNA mismatch repair protein MSH3
Gene Ontology GO:0006298; mismatch repair GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT4G25540 : homolog of DNA mismatch repair protein MSH3
RAP-DB (Rice) LOC_Os04g58630.2 : DNA mismatch repair protein MSH3, putative, expressed
MaizeGDB (Corn) Zm00025a057408
Brachypodium KQJ85401 , PNT62187 , PNT62186 , PNT62184
Barley HORVU2Hr1G085940.8 , HORVU2Hr1G085940.9 , HORVU2Hr1G085940.2 , HORVU2Hr1G085940.3 , HORVU2Hr1G085940.1 , HORVU2Hr1G085940.6 , HORVU2Hr1G085940.7 , HORVU2Hr1G085940.4 , HORVU2Hr1G085940.5 , HORVU2Hr1G085940.18 , HORVU2Hr1G085940.19 , HORVU2Hr1G085940.10 , HORVU2Hr1G085940.11 , HORVU2Hr1G085940.12 , HORVU2Hr1G085940.13 , HORVU2Hr1G085940.14 , HORVU2Hr1G085940.15 , HORVU2Hr1G085940.16 , HORVU2Hr1G085940.17 , HORVU2Hr1G085940.21 , HORVU2Hr1G085940.20 , HORVU2Hr1G085940.22
Wheat TraesCS2D02G352400 , TraesCS2B02G372400 , TraesCS2B02G372300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A
2 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
3 Sobic.009G253200 RNA polymerase sigma factor, putative, expressed -
4 Sobic.001G049800 DDT domain containing protein, putative, expressed -
5 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
6 Sobic.002G251800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
7 Sobic.001G480400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
9 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
10 Sobic.005G011000 Rf1, mitochondrial precursor, putative, expressed -
11 Sobic.010G099300 - K03501: gidB, 16S rRNA (guanine527-N7)-methyltransferase
12 Sobic.008G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
13 Sobic.009G238700 EMB2744, putative, expressed -
14 Sobic.004G227100 survival motor neuron containing protein, expressed K13130: GEMIN2, gem associated protein 2
15 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
16 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase
17 Sobic.001G368300 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
18 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
19 Sobic.007G185600 methyltransferase domain containing protein, expressed K15190: MEPCE, 7SK snRNA methylphosphate capping enzyme
20 Sobic.002G172600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bifunctional protein folD, putative, expressed -


Gene co-expression network
sample Sobic006G271900 Sobic006G271900 Sobic001G040600 Sobic001G040600 Sobic006G271900--Sobic001G040600 Sobic007G060600 Sobic007G060600 Sobic006G271900--Sobic007G060600 Sobic009G253200 Sobic009G253200 Sobic006G271900--Sobic009G253200 Sobic001G049800 Sobic001G049800 Sobic006G271900--Sobic001G049800 Sobic006G111200 Sobic006G111200 Sobic006G271900--Sobic006G111200 Sobic002G251800 Sobic002G251800 Sobic006G271900--Sobic002G251800 Sobic001G480400 Sobic001G480400 Sobic006G271900--Sobic001G480400 Sobic005G028300 Sobic005G028300 Sobic006G271900--Sobic005G028300 Sobic001G081300 Sobic001G081300 Sobic006G271900--Sobic001G081300 Sobic001G040600--Sobic007G060600 Sobic001G040600--Sobic006G271900 Sobic010G099300 Sobic010G099300 Sobic001G040600--Sobic010G099300 Sobic003G336500 Sobic003G336500 Sobic001G040600--Sobic003G336500 Sobic001G040600--Sobic001G049800 Sobic003G051500 Sobic003G051500 Sobic001G040600--Sobic003G051500 Sobic008G100400 Sobic008G100400 Sobic001G040600--Sobic008G100400 Sobic001G040600--Sobic001G081300 Sobic001G040600--Sobic002G251800 Sobic007G060600--Sobic001G049800 Sobic007G060600--Sobic001G040600 Sobic007G059700 Sobic007G059700 Sobic007G060600--Sobic007G059700 Sobic004G151000 Sobic004G151000 Sobic007G060600--Sobic004G151000 Sobic004G027300 Sobic004G027300 Sobic007G060600--Sobic004G027300 Sobic006G273900 Sobic006G273900 Sobic007G060600--Sobic006G273900 Sobic009G238700 Sobic009G238700 Sobic007G060600--Sobic009G238700 Sobic007G060600--Sobic006G111200 Sobic009G191500 Sobic009G191500 Sobic007G060600--Sobic009G191500 Sobic009G253200--Sobic006G271900 Sobic008G099900 Sobic008G099900 Sobic009G253200--Sobic008G099900 Sobic009G253200--Sobic002G251800 Sobic007G038700 Sobic007G038700 Sobic009G253200--Sobic007G038700 Sobic005G148400 Sobic005G148400 Sobic009G253200--Sobic005G148400 Sobic001G001200 Sobic001G001200 Sobic009G253200--Sobic001G001200 Sobic006G099501 Sobic006G099501 Sobic009G253200--Sobic006G099501 Sobic005G210700 Sobic005G210700 Sobic009G253200--Sobic005G210700 Sobic009G253200--Sobic005G028300 Sobic001G049800--Sobic007G060600 Sobic001G049800--Sobic004G151000 Sobic001G049800--Sobic004G027300 Sobic001G544300 Sobic001G544300 Sobic001G049800--Sobic001G544300 Sobic010G224700 Sobic010G224700 Sobic001G049800--Sobic010G224700 Sobic001G049800--Sobic006G111200 Sobic006G059500 Sobic006G059500 Sobic001G049800--Sobic006G059500 Sobic002G378100 Sobic002G378100 Sobic001G049800--Sobic002G378100 Sobic010G083900 Sobic010G083900 Sobic001G049800--Sobic010G083900 Sobic001G453500 Sobic001G453500 Sobic006G111200--Sobic001G453500 Sobic006G111200--Sobic004G151000 Sobic001G368300 Sobic001G368300 Sobic006G111200--Sobic001G368300 Sobic006G111200--Sobic007G060600 Sobic006G111200--Sobic001G049800 Sobic006G111200--Sobic006G271900 Sobic002G380100 Sobic002G380100 Sobic006G111200--Sobic002G380100 Sobic006G111200--Sobic006G059500 Sobic006G111200--Sobic007G059700 Sobic002G251800--Sobic005G028300 Sobic002G251800--Sobic007G038700 Sobic002G084400 Sobic002G084400 Sobic002G251800--Sobic002G084400 Sobic002G251800--Sobic006G271900 Sobic002G251800--Sobic001G040600 Sobic002G251800--Sobic008G099900 Sobic006G085900 Sobic006G085900 Sobic002G251800--Sobic006G085900 Sobic002G251800--Sobic007G060600 Sobic002G251800--Sobic001G049800 Sobic001G480400--Sobic006G271900 Sobic004G216700 Sobic004G216700 Sobic001G480400--Sobic004G216700 Sobic005G011000 Sobic005G011000 Sobic001G480400--Sobic005G011000 Sobic002G183300 Sobic002G183300 Sobic001G480400--Sobic002G183300 Sobic001G480400--Sobic001G001200 Sobic001G480400--Sobic005G210700 Sobic010G143400 Sobic010G143400 Sobic001G480400--Sobic010G143400 Sobic001G480400--Sobic008G099900 Sobic007G210801 Sobic007G210801 Sobic001G480400--Sobic007G210801 Sobic002G389200 Sobic002G389200 Sobic005G028300--Sobic002G389200 Sobic005G028300--Sobic003G051500 Sobic005G028300--Sobic002G251800 Sobic005G028300--Sobic001G001200 Sobic003G419800 Sobic003G419800 Sobic005G028300--Sobic003G419800 Sobic003G014700 Sobic003G014700 Sobic005G028300--Sobic003G014700 Sobic001G391101 Sobic001G391101 Sobic005G028300--Sobic001G391101 Sobic005G028300--Sobic002G084400 Sobic005G028300--Sobic010G083900 Sobic001G081300--Sobic001G391101 Sobic007G179600 Sobic007G179600 Sobic001G081300--Sobic007G179600 Sobic001G347100 Sobic001G347100 Sobic001G081300--Sobic001G347100 Sobic001G081300--Sobic009G238700 Sobic001G081300--Sobic003G051500 Sobic001G081300--Sobic003G419800 Sobic001G081300--Sobic007G060600 Sobic001G081300--Sobic001G049800 Sobic001G081300--Sobic010G099300
Octagon: transcription factors


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