Gene annotation
Transcriptome id Sobic.001G480400.1
Synonym Sb01g044960, COR27
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1B6QQ37
Pfam -
Panther DB PTHR33676 PTHR33676:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G42900 : cold regulated gene 27
RAP-DB (Rice) LOC_Os03g08580.1 : expressed protein
MaizeGDB (Corn) Zm00025a053254 , Zm00025a000963
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G480400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3
2 Sobic.004G216700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 21930910)@-(PubMedID : 24884377)@response regulator receiver domain containing protein, expressed K12127: TOC1, pseudo-response regulator 1
3 Sobic.005G011000 Rf1, mitochondrial precursor, putative, expressed -
4 Sobic.002G183300 GTP binding protein, putative, expressed -
5 Sobic.001G001200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
6 Sobic.005G210700 pentatricopeptide repeat domain containing protein, putative, expressed -
7 Sobic.010G143400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.008G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
9 Sobic.007G210801 - K10277: KDM8, lysine-specific demethylase 8
10 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
11 Sobic.001G401400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
12 Sobic.002G212700 - -
13 Sobic.009G253200 RNA polymerase sigma factor, putative, expressed -
14 Sobic.001G105600 OsFBDUF60 - F-box and DUF domain containing protein, expressed -
15 Sobic.007G179600 pentatricopeptide, putative, expressed -
16 Sobic.001G049800 DDT domain containing protein, putative, expressed -
17 Sobic.002G172600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bifunctional protein folD, putative, expressed -
18 Sobic.010G123700 expressed protein -
19 Sobic.002G128400 WRKY115, expressed -
20 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I


Gene co-expression network
sample Sobic001G480400 Sobic001G480400 Sobic006G271900 Sobic006G271900 Sobic001G480400--Sobic006G271900 Sobic004G216700 Sobic004G216700 Sobic001G480400--Sobic004G216700 Sobic005G011000 Sobic005G011000 Sobic001G480400--Sobic005G011000 Sobic002G183300 Sobic002G183300 Sobic001G480400--Sobic002G183300 Sobic001G001200 Sobic001G001200 Sobic001G480400--Sobic001G001200 Sobic005G210700 Sobic005G210700 Sobic001G480400--Sobic005G210700 Sobic010G143400 Sobic010G143400 Sobic001G480400--Sobic010G143400 Sobic008G099900 Sobic008G099900 Sobic001G480400--Sobic008G099900 Sobic007G210801 Sobic007G210801 Sobic001G480400--Sobic007G210801 Sobic001G040600 Sobic001G040600 Sobic006G271900--Sobic001G040600 Sobic007G060600 Sobic007G060600 Sobic006G271900--Sobic007G060600 Sobic009G253200 Sobic009G253200 Sobic006G271900--Sobic009G253200 Sobic001G049800 Sobic001G049800 Sobic006G271900--Sobic001G049800 Sobic006G111200 Sobic006G111200 Sobic006G271900--Sobic006G111200 Sobic002G251800 Sobic002G251800 Sobic006G271900--Sobic002G251800 Sobic006G271900--Sobic001G480400 Sobic005G028300 Sobic005G028300 Sobic006G271900--Sobic005G028300 Sobic001G081300 Sobic001G081300 Sobic006G271900--Sobic001G081300 Sobic002G376400 Sobic002G376400 Sobic004G216700--Sobic002G376400 Sobic005G085100 Sobic005G085100 Sobic004G216700--Sobic005G085100 Sobic001G341300 Sobic001G341300 Sobic004G216700--Sobic001G341300 Sobic004G216700--Sobic001G480400 Sobic004G216700--Sobic010G143400 Sobic009G159700 Sobic009G159700 Sobic004G216700--Sobic009G159700 Sobic006G241200 Sobic006G241200 Sobic004G216700--Sobic006G241200 Sobic008G013900 Sobic008G013900 Sobic004G216700--Sobic008G013900 Sobic007G189800 Sobic007G189800 Sobic004G216700--Sobic007G189800 Sobic005G011000--Sobic006G271900 Sobic009G116400 Sobic009G116400 Sobic005G011000--Sobic009G116400 Sobic004G036700 Sobic004G036700 Sobic005G011000--Sobic004G036700 Sobic001G347100 Sobic001G347100 Sobic005G011000--Sobic001G347100 Sobic005G011000--Sobic005G210700 Sobic001G187800 Sobic001G187800 Sobic005G011000--Sobic001G187800 Sobic003G419800 Sobic003G419800 Sobic005G011000--Sobic003G419800 Sobic002G389200 Sobic002G389200 Sobic005G011000--Sobic002G389200 Sobic005G011000--Sobic005G028300 Sobic004G025100 Sobic004G025100 Sobic002G183300--Sobic004G025100 Sobic001G401400 Sobic001G401400 Sobic002G183300--Sobic001G401400 Sobic005G059400 Sobic005G059400 Sobic002G183300--Sobic005G059400 Sobic001G105600 Sobic001G105600 Sobic002G183300--Sobic001G105600 Sobic009G253400 Sobic009G253400 Sobic002G183300--Sobic009G253400 Sobic001G334100 Sobic001G334100 Sobic002G183300--Sobic001G334100 Sobic001G122200 Sobic001G122200 Sobic002G183300--Sobic001G122200 Sobic001G204700 Sobic001G204700 Sobic002G183300--Sobic001G204700 Sobic008G000600 Sobic008G000600 Sobic002G183300--Sobic008G000600 Sobic003G051500 Sobic003G051500 Sobic001G001200--Sobic003G051500 Sobic001G001200--Sobic005G028300 Sobic001G001200--Sobic003G419800 Sobic001G391101 Sobic001G391101 Sobic001G001200--Sobic001G391101 Sobic001G390900 Sobic001G390900 Sobic001G001200--Sobic001G390900 Sobic003G183900 Sobic003G183900 Sobic001G001200--Sobic003G183900 Sobic001G001200--Sobic001G081300 Sobic007G179600 Sobic007G179600 Sobic001G001200--Sobic007G179600 Sobic010G083900 Sobic010G083900 Sobic001G001200--Sobic010G083900 Sobic005G210700--Sobic008G099900 Sobic009G155400 Sobic009G155400 Sobic005G210700--Sobic009G155400 Sobic005G210700--Sobic009G116400 Sobic006G085900 Sobic006G085900 Sobic005G210700--Sobic006G085900 Sobic005G210700--Sobic007G179600 Sobic005G210700--Sobic001G347100 Sobic008G066900 Sobic008G066900 Sobic005G210700--Sobic008G066900 Sobic006G069100 Sobic006G069100 Sobic005G210700--Sobic006G069100 Sobic005G210700--Sobic005G011000 Sobic007G131200 Sobic007G131200 Sobic010G143400--Sobic007G131200 Sobic009G197000 Sobic009G197000 Sobic010G143400--Sobic009G197000 Sobic002G128400 Sobic002G128400 Sobic010G143400--Sobic002G128400 Sobic010G143400--Sobic008G013900 Sobic009G162401 Sobic009G162401 Sobic010G143400--Sobic009G162401 Sobic010G270900 Sobic010G270900 Sobic010G143400--Sobic010G270900 Sobic001G246200 Sobic001G246200 Sobic010G143400--Sobic001G246200 Sobic004G315100 Sobic004G315100 Sobic010G143400--Sobic004G315100 Sobic006G099501 Sobic006G099501 Sobic010G143400--Sobic006G099501 Sobic008G099900--Sobic005G210700 Sobic008G099900--Sobic006G085900 Sobic008G099900--Sobic009G155400 Sobic008G099900--Sobic002G251800 Sobic004G217900 Sobic004G217900 Sobic008G099900--Sobic004G217900 Sobic006G109400 Sobic006G109400 Sobic008G099900--Sobic006G109400 Sobic008G099900--Sobic009G116400 Sobic008G099900--Sobic007G179600 Sobic008G099900--Sobic006G271900 Sobic007G210801--Sobic007G179600 Sobic007G210801--Sobic001G391101 Sobic007G210801--Sobic003G419800 Sobic007G210801--Sobic001G347100 Sobic007G210801--Sobic001G081300 Sobic003G128000 Sobic003G128000 Sobic007G210801--Sobic003G128000 Sobic007G210801--Sobic001G001200 Sobic007G210801--Sobic005G210700 Sobic007G210801--Sobic005G028300
Octagon: transcription factors


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