Gene annotation
Transcriptome id Sobic.007G210801.4,Sobic.007G210801.2,Sobic.007G210801.5,Sobic.007G210801.1,Sobic.007G210801.3
Synonym -
Functional annotation -
UniProt A0A1Z5RBW3 , A0A1Z5RC25 , A0A1Z5RAZ5 , A0A1Z5RAY1 , A0A1Z5RAY7
Pfam PF13621 PF08007
Panther DB PTHR12461 PTHR12461:SF38
NCBI CDD KOG2132; Uncharacterized conserved protein, contains JmjC domain
KEGG Orthology K10277; KDM8, lysine-specific demethylase 8
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G20810 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os09g31380.1 : jmjC domain-containing protein 5, putative, expressed
MaizeGDB (Corn) Zm00025a033802
Brachypodium PNT64835 , PNT64834 , KQJ90751
Barley -
Wheat TraesCS7A02G246000 , TraesCS7D02G244500 , TraesCS7B02G145500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G179600 pentatricopeptide, putative, expressed -
2 Sobic.001G391101 - -
3 Sobic.003G419800 pentatricopeptide repeat protein PPR1106-17, putative, expressed -
4 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
5 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
6 Sobic.003G128000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.001G001200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.005G210700 pentatricopeptide repeat domain containing protein, putative, expressed -
9 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
10 Sobic.004G216700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 21930910)@-(PubMedID : 24884377)@response regulator receiver domain containing protein, expressed K12127: TOC1, pseudo-response regulator 1
11 Sobic.005G011000 Rf1, mitochondrial precursor, putative, expressed -
12 Sobic.010G143400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.001G149100 vegetative storage protein, putative, expressed -
14 Sobic.002G389200 pentatricopeptide repeat domain containing protein, putative, expressed -
15 Sobic.006G126300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
16 Sobic.003G299200 pentatricopeptide, putative, expressed -
17 Sobic.001G480400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.006G099501 - -
19 Sobic.003G014700 pentatricopeptide, putative, expressed -
20 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic007G210801 Sobic007G210801 Sobic007G179600 Sobic007G179600 Sobic007G210801--Sobic007G179600 Sobic001G391101 Sobic001G391101 Sobic007G210801--Sobic001G391101 Sobic003G419800 Sobic003G419800 Sobic007G210801--Sobic003G419800 Sobic001G347100 Sobic001G347100 Sobic007G210801--Sobic001G347100 Sobic001G081300 Sobic001G081300 Sobic007G210801--Sobic001G081300 Sobic003G128000 Sobic003G128000 Sobic007G210801--Sobic003G128000 Sobic001G001200 Sobic001G001200 Sobic007G210801--Sobic001G001200 Sobic005G210700 Sobic005G210700 Sobic007G210801--Sobic005G210700 Sobic005G028300 Sobic005G028300 Sobic007G210801--Sobic005G028300 Sobic007G179600--Sobic001G081300 Sobic007G179600--Sobic001G347100 Sobic007G179600--Sobic003G419800 Sobic007G179600--Sobic001G391101 Sobic007G179600--Sobic005G210700 Sobic009G238700 Sobic009G238700 Sobic007G179600--Sobic009G238700 Sobic008G066900 Sobic008G066900 Sobic007G179600--Sobic008G066900 Sobic008G099900 Sobic008G099900 Sobic007G179600--Sobic008G099900 Sobic007G179600--Sobic007G210801 Sobic001G391101--Sobic001G081300 Sobic001G391101--Sobic001G347100 Sobic003G051500 Sobic003G051500 Sobic001G391101--Sobic003G051500 Sobic001G391101--Sobic005G028300 Sobic001G391101--Sobic007G179600 Sobic001G391101--Sobic003G419800 Sobic003G014700 Sobic003G014700 Sobic001G391101--Sobic003G014700 Sobic001G391101--Sobic001G001200 Sobic004G241000 Sobic004G241000 Sobic001G391101--Sobic004G241000 Sobic003G419800--Sobic005G028300 Sobic003G419800--Sobic001G001200 Sobic003G419800--Sobic007G179600 Sobic003G419800--Sobic001G081300 Sobic003G419800--Sobic003G051500 Sobic003G419800--Sobic001G391101 Sobic001G390900 Sobic001G390900 Sobic003G419800--Sobic001G390900 Sobic003G419800--Sobic003G014700 Sobic007G182600 Sobic007G182600 Sobic003G419800--Sobic007G182600 Sobic001G149100 Sobic001G149100 Sobic001G347100--Sobic001G149100 Sobic001G347100--Sobic001G391101 Sobic001G347100--Sobic001G081300 Sobic001G347100--Sobic009G238700 Sobic001G347100--Sobic007G179600 Sobic003G299200 Sobic003G299200 Sobic001G347100--Sobic003G299200 Sobic001G347100--Sobic004G241000 Sobic006G069100 Sobic006G069100 Sobic001G347100--Sobic006G069100 Sobic009G155400 Sobic009G155400 Sobic001G347100--Sobic009G155400 Sobic001G081300--Sobic001G391101 Sobic001G081300--Sobic007G179600 Sobic001G081300--Sobic001G347100 Sobic001G081300--Sobic009G238700 Sobic001G081300--Sobic003G051500 Sobic001G081300--Sobic003G419800 Sobic007G060600 Sobic007G060600 Sobic001G081300--Sobic007G060600 Sobic001G049800 Sobic001G049800 Sobic001G081300--Sobic001G049800 Sobic010G099300 Sobic010G099300 Sobic001G081300--Sobic010G099300 Sobic001G392100 Sobic001G392100 Sobic003G128000--Sobic001G392100 Sobic003G128000--Sobic009G155400 Sobic001G009400 Sobic001G009400 Sobic003G128000--Sobic001G009400 Sobic008G163400 Sobic008G163400 Sobic003G128000--Sobic008G163400 Sobic004G217900 Sobic004G217900 Sobic003G128000--Sobic004G217900 Sobic003G128000--Sobic001G149100 Sobic003G239000 Sobic003G239000 Sobic003G128000--Sobic003G239000 Sobic003G128000--Sobic001G347100 Sobic001G254400 Sobic001G254400 Sobic003G128000--Sobic001G254400 Sobic001G001200--Sobic003G051500 Sobic001G001200--Sobic005G028300 Sobic001G001200--Sobic003G419800 Sobic001G001200--Sobic001G391101 Sobic001G001200--Sobic001G390900 Sobic003G183900 Sobic003G183900 Sobic001G001200--Sobic003G183900 Sobic001G001200--Sobic001G081300 Sobic001G001200--Sobic007G179600 Sobic010G083900 Sobic010G083900 Sobic001G001200--Sobic010G083900 Sobic005G210700--Sobic008G099900 Sobic005G210700--Sobic009G155400 Sobic009G116400 Sobic009G116400 Sobic005G210700--Sobic009G116400 Sobic006G085900 Sobic006G085900 Sobic005G210700--Sobic006G085900 Sobic005G210700--Sobic007G179600 Sobic005G210700--Sobic001G347100 Sobic005G210700--Sobic008G066900 Sobic005G210700--Sobic006G069100 Sobic005G011000 Sobic005G011000 Sobic005G210700--Sobic005G011000 Sobic002G389200 Sobic002G389200 Sobic005G028300--Sobic002G389200 Sobic005G028300--Sobic003G051500 Sobic002G251800 Sobic002G251800 Sobic005G028300--Sobic002G251800 Sobic005G028300--Sobic001G001200 Sobic005G028300--Sobic003G419800 Sobic005G028300--Sobic003G014700 Sobic005G028300--Sobic001G391101 Sobic002G084400 Sobic002G084400 Sobic005G028300--Sobic002G084400 Sobic005G028300--Sobic010G083900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.