Gene annotation
Transcriptome id Sobic.004G216700.1
Synonym TOC1, PRR1,TIMING OF CAB 1, AtTOC1, APRR1, SbTOC1, Sb04g026190, TOC1;TIMING OF CAB 1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
- (PubMedID : 21930910)
- (PubMedID : 24884377)
response regulator receiver domain containing protein, expressed
UniProt C5XXQ3
Pfam PF00072 PF06203
Panther DB PTHR26402 PTHR26402:SF465
NCBI CDD -
KEGG Orthology K12127; TOC1, pseudo-response regulator 1
Gene Ontology GO:0000160; phosphorelay signal transduction system GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G61380 : CCT motif -containing response regulator protein
RAP-DB (Rice) LOC_Os02g40510.1 : response regulator receiver domain containing protein, expressed
MaizeGDB (Corn) Zm00025a021175 , Zm00025a028630 , Zm00025a021136 , Zm00025a028629 , Zm00025a013511 , Zm00025a027141 , Zm00025a031986
Brachypodium KQK00364
Barley HORVU6Hr1G057630.2 , HORVU6Hr1G057630.1
Wheat TraesCS6A02G227900 , TraesCS6A02G227900 , TraesCS6D02G207100 , TraesCS6D02G207100 , TraesCS6B02G253900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G376400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.005G085100 - -
3 Sobic.001G341300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATP-dependent protease, putative, expressed -
4 Sobic.001G480400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.010G143400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.009G159700 expressed protein -
7 Sobic.006G241200 expressed protein -
8 Sobic.008G013900 O-methyltransferase, putative, expressed -
9 Sobic.007G189800 B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed -
10 Sobic.002G172600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bifunctional protein folD, putative, expressed -
11 Sobic.005G148500 OsFBX402 - F-box domain containing protein, expressed -
12 Sobic.009G162401 - -
13 Sobic.004G315100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed -
14 Sobic.002G128400 WRKY115, expressed -
15 Sobic.008G185900 RNA recognition motif containing protein, expressed -
16 Sobic.001G246200 MBTB49 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
17 Sobic.007G129401 - -
18 Sobic.010G270900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GDSL-like lipase/acylhydrolase, putative, expressed -
19 Sobic.001G164200 cytochrome P450, putative, expressed -
20 Sobic.004G345900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed -


Gene co-expression network
sample Sobic004G216700 Sobic004G216700 Sobic002G376400 Sobic002G376400 Sobic004G216700--Sobic002G376400 Sobic005G085100 Sobic005G085100 Sobic004G216700--Sobic005G085100 Sobic001G341300 Sobic001G341300 Sobic004G216700--Sobic001G341300 Sobic001G480400 Sobic001G480400 Sobic004G216700--Sobic001G480400 Sobic010G143400 Sobic010G143400 Sobic004G216700--Sobic010G143400 Sobic009G159700 Sobic009G159700 Sobic004G216700--Sobic009G159700 Sobic006G241200 Sobic006G241200 Sobic004G216700--Sobic006G241200 Sobic008G013900 Sobic008G013900 Sobic004G216700--Sobic008G013900 Sobic007G189800 Sobic007G189800 Sobic004G216700--Sobic007G189800 Sobic002G376400--Sobic001G341300 Sobic002G376400--Sobic004G216700 Sobic003G401400 Sobic003G401400 Sobic002G376400--Sobic003G401400 Sobic008G185900 Sobic008G185900 Sobic002G376400--Sobic008G185900 Sobic009G129500 Sobic009G129500 Sobic002G376400--Sobic009G129500 Sobic002G376400--Sobic009G159700 Sobic009G166801 Sobic009G166801 Sobic002G376400--Sobic009G166801 Sobic005G172300 Sobic005G172300 Sobic002G376400--Sobic005G172300 Sobic010G072300 Sobic010G072300 Sobic002G376400--Sobic010G072300 Sobic005G148500 Sobic005G148500 Sobic005G085100--Sobic005G148500 Sobic005G148400 Sobic005G148400 Sobic005G085100--Sobic005G148400 Sobic005G043400 Sobic005G043400 Sobic005G085100--Sobic005G043400 Sobic005G221550 Sobic005G221550 Sobic005G085100--Sobic005G221550 Sobic002G128400 Sobic002G128400 Sobic005G085100--Sobic002G128400 Sobic009G162401 Sobic009G162401 Sobic005G085100--Sobic009G162401 Sobic005G170800 Sobic005G170800 Sobic005G085100--Sobic005G170800 Sobic001G271000 Sobic001G271000 Sobic005G085100--Sobic001G271000 Sobic009G101600 Sobic009G101600 Sobic005G085100--Sobic009G101600 Sobic001G341300--Sobic002G376400 Sobic006G159400 Sobic006G159400 Sobic001G341300--Sobic006G159400 Sobic001G341300--Sobic004G216700 Sobic001G341300--Sobic009G159700 Sobic001G341300--Sobic008G185900 Sobic001G341300--Sobic009G166801 Sobic001G253600 Sobic001G253600 Sobic001G341300--Sobic001G253600 Sobic001G516500 Sobic001G516500 Sobic001G341300--Sobic001G516500 Sobic001G341300--Sobic005G172300 Sobic006G271900 Sobic006G271900 Sobic001G480400--Sobic006G271900 Sobic001G480400--Sobic004G216700 Sobic005G011000 Sobic005G011000 Sobic001G480400--Sobic005G011000 Sobic002G183300 Sobic002G183300 Sobic001G480400--Sobic002G183300 Sobic001G001200 Sobic001G001200 Sobic001G480400--Sobic001G001200 Sobic005G210700 Sobic005G210700 Sobic001G480400--Sobic005G210700 Sobic001G480400--Sobic010G143400 Sobic008G099900 Sobic008G099900 Sobic001G480400--Sobic008G099900 Sobic007G210801 Sobic007G210801 Sobic001G480400--Sobic007G210801 Sobic007G131200 Sobic007G131200 Sobic010G143400--Sobic007G131200 Sobic009G197000 Sobic009G197000 Sobic010G143400--Sobic009G197000 Sobic010G143400--Sobic002G128400 Sobic010G143400--Sobic008G013900 Sobic010G143400--Sobic009G162401 Sobic010G270900 Sobic010G270900 Sobic010G143400--Sobic010G270900 Sobic001G246200 Sobic001G246200 Sobic010G143400--Sobic001G246200 Sobic004G315100 Sobic004G315100 Sobic010G143400--Sobic004G315100 Sobic006G099501 Sobic006G099501 Sobic010G143400--Sobic006G099501 Sobic005G085200 Sobic005G085200 Sobic009G159700--Sobic005G085200 Sobic005G085600 Sobic005G085600 Sobic009G159700--Sobic005G085600 Sobic004G285800 Sobic004G285800 Sobic009G159700--Sobic004G285800 Sobic009G159700--Sobic009G166801 Sobic010G057300 Sobic010G057300 Sobic009G159700--Sobic010G057300 Sobic009G159700--Sobic007G189800 Sobic009G159700--Sobic006G241200 Sobic004G345900 Sobic004G345900 Sobic009G159700--Sobic004G345900 Sobic010G057400 Sobic010G057400 Sobic009G159700--Sobic010G057400 Sobic006G241200--Sobic010G270900 Sobic006G241200--Sobic009G159700 Sobic006G241200--Sobic008G013900 Sobic006G241200--Sobic005G085200 Sobic002G279100 Sobic002G279100 Sobic006G241200--Sobic002G279100 Sobic006G241200--Sobic004G216700 Sobic006G241200--Sobic007G189800 Sobic006G241200--Sobic009G162401 Sobic006G241200--Sobic009G197000 Sobic001G164200 Sobic001G164200 Sobic008G013900--Sobic001G164200 Sobic001G182300 Sobic001G182300 Sobic008G013900--Sobic001G182300 Sobic008G124100 Sobic008G124100 Sobic008G013900--Sobic008G124100 Sobic003G219000 Sobic003G219000 Sobic008G013900--Sobic003G219000 Sobic007G129401 Sobic007G129401 Sobic008G013900--Sobic007G129401 Sobic008G049000 Sobic008G049000 Sobic008G013900--Sobic008G049000 Sobic002G094500 Sobic002G094500 Sobic008G013900--Sobic002G094500 Sobic003G176100 Sobic003G176100 Sobic008G013900--Sobic003G176100 Sobic008G013900--Sobic010G143400 Sobic001G277000 Sobic001G277000 Sobic007G189800--Sobic001G277000 Sobic010G146200 Sobic010G146200 Sobic007G189800--Sobic010G146200 Sobic007G189800--Sobic008G124100 Sobic009G064766 Sobic009G064766 Sobic007G189800--Sobic009G064766 Sobic007G189800--Sobic005G085600 Sobic007G189800--Sobic005G085200 Sobic005G003200 Sobic005G003200 Sobic007G189800--Sobic005G003200 Sobic009G078500 Sobic009G078500 Sobic007G189800--Sobic009G078500 Sobic006G249000 Sobic006G249000 Sobic007G189800--Sobic006G249000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.