Gene annotation
Transcriptome id Sobic.004G315100.2,Sobic.004G315100.1
Synonym WCRKC1, Sb04g034680
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
thioredoxin, putative, expressed
UniProt A0A194YSI2 , A0A194YSN0
Pfam PF00085
Panther DB PTHR10438 PTHR10438:SF283
NCBI CDD KOG0907; Thioredoxin
KEGG Orthology -
Gene Ontology GO:0015035; protein disulfide oxidoreductase activity GO:0006662glycerol ether metabolic process


Orthologs (automatic annotation)
TAIR AT5G06690 : WCRKC thioredoxin 1
RAP-DB (Rice) LOC_Os02g53400.1 : thioredoxin, putative, expressed
MaizeGDB (Corn) Zm00025a033049 , Zm00025a022292
Brachypodium KQK01673
Barley HORVU6Hr1G078960.8 , HORVU6Hr1G078960.1 , HORVU6Hr1G078960.2 , HORVU6Hr1G078960.3 , HORVU6Hr1G078960.4 , HORVU6Hr1G078960.5 , HORVU6Hr1G078960.6 , HORVU6Hr1G078960.7 , HORVU5Hr1G020120.1
Wheat TraesCS6D02G302900 , TraesCS6A02G323100 , TraesCS6A02G323100 , TraesCS6B02G353700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G345900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed -
2 Sobic.010G143400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.010G057400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
4 Sobic.009G197000 O-methyltransferase family 2 protein (At)(PubMedID : 27208977)@O-methyltransferase, putative, expressed -
5 Sobic.001G277000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
6 Sobic.004G216700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 21930910)@-(PubMedID : 24884377)@response regulator receiver domain containing protein, expressed K12127: TOC1, pseudo-response regulator 1
7 Sobic.009G159700 expressed protein -
8 Sobic.007G131200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.005G085200 OsFBK25 - F-box domain and kelch repeat containing protein, expressed -
10 Sobic.010G057300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
11 Sobic.010G270900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GDSL-like lipase/acylhydrolase, putative, expressed -
12 Sobic.009G180100 LTPL61 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -
13 Sobic.002G331000 OsFBX462 - F-box domain containing protein, expressed -
14 Sobic.002G213800 auxin-repressed protein, putative, expressed -
15 Sobic.008G013900 O-methyltransferase, putative, expressed -
16 Sobic.003G400266 - -
17 Sobic.007G189800 B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed -
18 Sobic.006G241200 expressed protein -
19 Sobic.005G083733 - -
20 Sobic.001G379600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.16 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit


Gene co-expression network
sample Sobic004G315100 Sobic004G315100 Sobic004G345900 Sobic004G345900 Sobic004G315100--Sobic004G345900 Sobic010G143400 Sobic010G143400 Sobic004G315100--Sobic010G143400 Sobic010G057400 Sobic010G057400 Sobic004G315100--Sobic010G057400 Sobic009G197000 Sobic009G197000 Sobic004G315100--Sobic009G197000 Sobic001G277000 Sobic001G277000 Sobic004G315100--Sobic001G277000 Sobic004G216700 Sobic004G216700 Sobic004G315100--Sobic004G216700 Sobic009G159700 Sobic009G159700 Sobic004G315100--Sobic009G159700 Sobic007G131200 Sobic007G131200 Sobic004G315100--Sobic007G131200 Sobic005G085200 Sobic005G085200 Sobic004G315100--Sobic005G085200 Sobic004G345900--Sobic010G057400 Sobic004G345900--Sobic005G085200 Sobic010G057300 Sobic010G057300 Sobic004G345900--Sobic010G057300 Sobic004G345900--Sobic001G277000 Sobic007G189800 Sobic007G189800 Sobic004G345900--Sobic007G189800 Sobic004G199600 Sobic004G199600 Sobic004G345900--Sobic004G199600 Sobic002G213800 Sobic002G213800 Sobic004G345900--Sobic002G213800 Sobic010G270300 Sobic010G270300 Sobic004G345900--Sobic010G270300 Sobic010G146200 Sobic010G146200 Sobic004G345900--Sobic010G146200 Sobic010G143400--Sobic007G131200 Sobic010G143400--Sobic009G197000 Sobic002G128400 Sobic002G128400 Sobic010G143400--Sobic002G128400 Sobic008G013900 Sobic008G013900 Sobic010G143400--Sobic008G013900 Sobic009G162401 Sobic009G162401 Sobic010G143400--Sobic009G162401 Sobic010G270900 Sobic010G270900 Sobic010G143400--Sobic010G270900 Sobic001G246200 Sobic001G246200 Sobic010G143400--Sobic001G246200 Sobic010G143400--Sobic004G315100 Sobic006G099501 Sobic006G099501 Sobic010G143400--Sobic006G099501 Sobic010G057400--Sobic004G345900 Sobic010G057400--Sobic010G057300 Sobic010G057400--Sobic005G085200 Sobic010G057400--Sobic004G199600 Sobic010G057400--Sobic010G270300 Sobic010G057400--Sobic007G189800 Sobic010G057400--Sobic001G277000 Sobic010G057400--Sobic010G146200 Sobic009G078500 Sobic009G078500 Sobic010G057400--Sobic009G078500 Sobic009G197000--Sobic010G143400 Sobic009G197000--Sobic005G085200 Sobic009G197000--Sobic008G013900 Sobic009G197000--Sobic004G345900 Sobic001G191200 Sobic001G191200 Sobic009G197000--Sobic001G191200 Sobic002G331000 Sobic002G331000 Sobic009G197000--Sobic002G331000 Sobic009G197000--Sobic007G131200 Sobic001G141300 Sobic001G141300 Sobic009G197000--Sobic001G141300 Sobic003G406700 Sobic003G406700 Sobic009G197000--Sobic003G406700 Sobic008G124100 Sobic008G124100 Sobic001G277000--Sobic008G124100 Sobic001G277000--Sobic007G189800 Sobic009G064766 Sobic009G064766 Sobic001G277000--Sobic009G064766 Sobic001G277000--Sobic004G345900 Sobic001G277000--Sobic009G078500 Sobic001G277000--Sobic002G213800 Sobic001G277000--Sobic004G199600 Sobic001G277000--Sobic005G085200 Sobic001G277000--Sobic010G146200 Sobic002G376400 Sobic002G376400 Sobic004G216700--Sobic002G376400 Sobic005G085100 Sobic005G085100 Sobic004G216700--Sobic005G085100 Sobic001G341300 Sobic001G341300 Sobic004G216700--Sobic001G341300 Sobic001G480400 Sobic001G480400 Sobic004G216700--Sobic001G480400 Sobic004G216700--Sobic010G143400 Sobic004G216700--Sobic009G159700 Sobic006G241200 Sobic006G241200 Sobic004G216700--Sobic006G241200 Sobic004G216700--Sobic008G013900 Sobic004G216700--Sobic007G189800 Sobic009G159700--Sobic005G085200 Sobic005G085600 Sobic005G085600 Sobic009G159700--Sobic005G085600 Sobic004G285800 Sobic004G285800 Sobic009G159700--Sobic004G285800 Sobic009G166801 Sobic009G166801 Sobic009G159700--Sobic009G166801 Sobic009G159700--Sobic010G057300 Sobic009G159700--Sobic007G189800 Sobic009G159700--Sobic006G241200 Sobic009G159700--Sobic004G345900 Sobic009G159700--Sobic010G057400 Sobic007G131200--Sobic010G143400 Sobic008G148400 Sobic008G148400 Sobic007G131200--Sobic008G148400 Sobic004G070200 Sobic004G070200 Sobic007G131200--Sobic004G070200 Sobic003G030400 Sobic003G030400 Sobic007G131200--Sobic003G030400 Sobic007G131200--Sobic009G197000 Sobic003G222600 Sobic003G222600 Sobic007G131200--Sobic003G222600 Sobic006G265400 Sobic006G265400 Sobic007G131200--Sobic006G265400 Sobic001G426400 Sobic001G426400 Sobic007G131200--Sobic001G426400 Sobic007G131200--Sobic003G406700 Sobic005G085200--Sobic010G057300 Sobic005G085200--Sobic005G085600 Sobic005G085200--Sobic004G345900 Sobic005G085200--Sobic007G189800 Sobic005G085200--Sobic004G199600 Sobic005G085200--Sobic010G057400 Sobic005G085200--Sobic009G159700 Sobic005G085200--Sobic009G078500 Sobic005G085200--Sobic004G285800
Octagon: transcription factors


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