Gene annotation
Transcriptome id Sobic.001G105600.1
Synonym Sb01g009433
Functional annotation OsFBDUF60 - F-box and DUF domain containing protein, expressed
UniProt A0A1B6QI99
Pfam PF00646 PF03478
Panther DB PTHR33110 PTHR33110:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G22060 : F-box family protein with a domain of unknown function (DUF295)
RAP-DB (Rice) LOC_Os11g38200.1 : OsFBDUF60 - F-box and DUF domain containing protein, expressed
MaizeGDB (Corn) Zm00025a029463
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G105600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
2 Sobic.002G183300 GTP binding protein, putative, expressed -
3 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3
4 Sobic.010G092801 - -
5 Sobic.004G227100 survival motor neuron containing protein, expressed K13130: GEMIN2, gem associated protein 2
6 Sobic.006G109400 pentatricopeptide, putative, expressed -
7 Sobic.004G025100 pentatricopeptide repeat-containing protein, putative, expressed -
8 Sobic.005G210700 pentatricopeptide repeat domain containing protein, putative, expressed -
9 Sobic.006G193500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.002G267600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
11 Sobic.003G098200 expressed protein -
12 Sobic.001G116800 zinc finger family protein, putative, expressed -
13 Sobic.001G480400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.001G264201 - -
16 Sobic.001G033900 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
17 Sobic.003G257200 expressed protein -
18 Sobic.008G039401 - -
19 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
20 Sobic.010G277200 zinc knuckle domain containing protein, expressed K10904: TIMELESS-interacting protein


Gene co-expression network
sample Sobic001G105600 Sobic001G105600 Sobic008G099900 Sobic008G099900 Sobic001G105600--Sobic008G099900 Sobic002G183300 Sobic002G183300 Sobic001G105600--Sobic002G183300 Sobic006G271900 Sobic006G271900 Sobic001G105600--Sobic006G271900 Sobic010G092801 Sobic010G092801 Sobic001G105600--Sobic010G092801 Sobic004G227100 Sobic004G227100 Sobic001G105600--Sobic004G227100 Sobic006G109400 Sobic006G109400 Sobic001G105600--Sobic006G109400 Sobic004G025100 Sobic004G025100 Sobic001G105600--Sobic004G025100 Sobic005G210700 Sobic005G210700 Sobic001G105600--Sobic005G210700 Sobic006G193500 Sobic006G193500 Sobic001G105600--Sobic006G193500 Sobic008G099900--Sobic005G210700 Sobic006G085900 Sobic006G085900 Sobic008G099900--Sobic006G085900 Sobic009G155400 Sobic009G155400 Sobic008G099900--Sobic009G155400 Sobic002G251800 Sobic002G251800 Sobic008G099900--Sobic002G251800 Sobic004G217900 Sobic004G217900 Sobic008G099900--Sobic004G217900 Sobic008G099900--Sobic006G109400 Sobic009G116400 Sobic009G116400 Sobic008G099900--Sobic009G116400 Sobic007G179600 Sobic007G179600 Sobic008G099900--Sobic007G179600 Sobic008G099900--Sobic006G271900 Sobic002G183300--Sobic004G025100 Sobic001G401400 Sobic001G401400 Sobic002G183300--Sobic001G401400 Sobic005G059400 Sobic005G059400 Sobic002G183300--Sobic005G059400 Sobic002G183300--Sobic001G105600 Sobic009G253400 Sobic009G253400 Sobic002G183300--Sobic009G253400 Sobic001G334100 Sobic001G334100 Sobic002G183300--Sobic001G334100 Sobic001G122200 Sobic001G122200 Sobic002G183300--Sobic001G122200 Sobic001G204700 Sobic001G204700 Sobic002G183300--Sobic001G204700 Sobic008G000600 Sobic008G000600 Sobic002G183300--Sobic008G000600 Sobic001G040600 Sobic001G040600 Sobic006G271900--Sobic001G040600 Sobic007G060600 Sobic007G060600 Sobic006G271900--Sobic007G060600 Sobic009G253200 Sobic009G253200 Sobic006G271900--Sobic009G253200 Sobic001G049800 Sobic001G049800 Sobic006G271900--Sobic001G049800 Sobic006G111200 Sobic006G111200 Sobic006G271900--Sobic006G111200 Sobic006G271900--Sobic002G251800 Sobic001G480400 Sobic001G480400 Sobic006G271900--Sobic001G480400 Sobic005G028300 Sobic005G028300 Sobic006G271900--Sobic005G028300 Sobic001G081300 Sobic001G081300 Sobic006G271900--Sobic001G081300 Sobic010G092801--Sobic002G183300 Sobic002G240900 Sobic002G240900 Sobic010G092801--Sobic002G240900 Sobic010G092801--Sobic004G227100 Sobic005G011000 Sobic005G011000 Sobic010G092801--Sobic005G011000 Sobic010G092801--Sobic006G271900 Sobic010G092801--Sobic009G116400 Sobic003G299200 Sobic003G299200 Sobic010G092801--Sobic003G299200 Sobic001G347100 Sobic001G347100 Sobic010G092801--Sobic001G347100 Sobic010G092801--Sobic001G081300 Sobic005G178700 Sobic005G178700 Sobic004G227100--Sobic005G178700 Sobic008G056900 Sobic008G056900 Sobic004G227100--Sobic008G056900 Sobic004G227100--Sobic006G271900 Sobic007G185600 Sobic007G185600 Sobic004G227100--Sobic007G185600 Sobic004G226900 Sobic004G226900 Sobic004G227100--Sobic004G226900 Sobic010G015700 Sobic010G015700 Sobic004G227100--Sobic010G015700 Sobic004G077000 Sobic004G077000 Sobic004G227100--Sobic004G077000 Sobic002G399200 Sobic002G399200 Sobic004G227100--Sobic002G399200 Sobic004G036700 Sobic004G036700 Sobic004G227100--Sobic004G036700 Sobic007G030000 Sobic007G030000 Sobic006G109400--Sobic007G030000 Sobic006G109400--Sobic001G347100 Sobic006G109400--Sobic008G099900 Sobic006G069100 Sobic006G069100 Sobic006G109400--Sobic006G069100 Sobic001G408300 Sobic001G408300 Sobic006G109400--Sobic001G408300 Sobic010G038800 Sobic010G038800 Sobic006G109400--Sobic010G038800 Sobic010G277200 Sobic010G277200 Sobic006G109400--Sobic010G277200 Sobic006G109400--Sobic009G155400 Sobic006G109400--Sobic005G210700 Sobic004G025100--Sobic006G069100 Sobic010G256000 Sobic010G256000 Sobic004G025100--Sobic010G256000 Sobic004G025100--Sobic009G155400 Sobic004G025100--Sobic002G183300 Sobic002G084400 Sobic002G084400 Sobic004G025100--Sobic002G084400 Sobic004G025100--Sobic005G028300 Sobic004G025100--Sobic005G210700 Sobic004G025100--Sobic009G116400 Sobic004G025100--Sobic006G085900 Sobic005G210700--Sobic008G099900 Sobic005G210700--Sobic009G155400 Sobic005G210700--Sobic009G116400 Sobic005G210700--Sobic006G085900 Sobic005G210700--Sobic007G179600 Sobic005G210700--Sobic001G347100 Sobic008G066900 Sobic008G066900 Sobic005G210700--Sobic008G066900 Sobic005G210700--Sobic006G069100 Sobic005G210700--Sobic005G011000 Sobic002G155100 Sobic002G155100 Sobic006G193500--Sobic002G155100 Sobic008G101900 Sobic008G101900 Sobic006G193500--Sobic008G101900 Sobic001G199500 Sobic001G199500 Sobic006G193500--Sobic001G199500 Sobic003G102700 Sobic003G102700 Sobic006G193500--Sobic003G102700 Sobic010G141600 Sobic010G141600 Sobic006G193500--Sobic010G141600 Sobic003G223000 Sobic003G223000 Sobic006G193500--Sobic003G223000 Sobic005G013300 Sobic005G013300 Sobic006G193500--Sobic005G013300 Sobic006G084300 Sobic006G084300 Sobic006G193500--Sobic006G084300 Sobic001G425700 Sobic001G425700 Sobic006G193500--Sobic001G425700
Octagon: transcription factors


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