Gene annotation
Transcriptome id Sobic.004G227100.2,Sobic.004G227100.1
Synonym Sb04g027150
Functional annotation survival motor neuron containing protein, expressed
UniProt C5XY91 , A0A1Z5RNN7
Pfam PF04938
Panther DB PTHR12794 PTHR12794:SF0
NCBI CDD -
KEGG Orthology K13130; GEMIN2, gem associated protein 2
Gene Ontology GO:0005681; spliceosomal complex GO:0000398mRNA splicing, via spliceosome GO:0000387spliceosomal snRNP assembly


Orthologs (automatic annotation)
TAIR AT1G54380 : spliceosome protein-related
RAP-DB (Rice) LOC_Os11g18830.1 : survival motor neuron containing protein, expressed
MaizeGDB (Corn) Zm00025a021010
Brachypodium -
Barley HORVU6Hr1G088840.10 , HORVU6Hr1G088840.11 , HORVU6Hr1G088840.1 , HORVU6Hr1G088840.3 , HORVU6Hr1G088840.6 , HORVU6Hr1G088840.7 , HORVU6Hr1G088840.8
Wheat -
Populus -


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cDNA sequences
Sobic.004G227100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G178700 OsFBX135 - F-box domain containing protein, expressed -
2 Sobic.008G056900 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
3 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3
4 Sobic.007G185600 methyltransferase domain containing protein, expressed K15190: MEPCE, 7SK snRNA methylphosphate capping enzyme
5 Sobic.004G226900 expressed protein -
6 Sobic.010G015700 pentatricopeptide, putative, expressed -
7 Sobic.004G077000 expressed protein -
8 Sobic.002G399200 - K14779: DDX52, ATP-dependent RNA helicase DDX52/ROK1
9 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase
10 Sobic.002G183300 GTP binding protein, putative, expressed -
11 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
12 Sobic.010G092801 - -
13 Sobic.007G077700 expressed protein -
14 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.001G401400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
16 Sobic.003G098200 expressed protein -
17 Sobic.001G368300 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
18 Sobic.007G197400 pentatricopeptide, putative, expressed -
19 Sobic.003G184400 jmjC domain-containing protein 4, putative, expressed -
20 Sobic.009G116400 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic004G227100 Sobic004G227100 Sobic005G178700 Sobic005G178700 Sobic004G227100--Sobic005G178700 Sobic008G056900 Sobic008G056900 Sobic004G227100--Sobic008G056900 Sobic006G271900 Sobic006G271900 Sobic004G227100--Sobic006G271900 Sobic007G185600 Sobic007G185600 Sobic004G227100--Sobic007G185600 Sobic004G226900 Sobic004G226900 Sobic004G227100--Sobic004G226900 Sobic010G015700 Sobic010G015700 Sobic004G227100--Sobic010G015700 Sobic004G077000 Sobic004G077000 Sobic004G227100--Sobic004G077000 Sobic002G399200 Sobic002G399200 Sobic004G227100--Sobic002G399200 Sobic004G036700 Sobic004G036700 Sobic004G227100--Sobic004G036700 Sobic005G178700--Sobic004G227100 Sobic003G223500 Sobic003G223500 Sobic005G178700--Sobic003G223500 Sobic007G143500 Sobic007G143500 Sobic005G178700--Sobic007G143500 Sobic004G235500 Sobic004G235500 Sobic005G178700--Sobic004G235500 Sobic001G401400 Sobic001G401400 Sobic005G178700--Sobic001G401400 Sobic006G067900 Sobic006G067900 Sobic005G178700--Sobic006G067900 Sobic007G030600 Sobic007G030600 Sobic005G178700--Sobic007G030600 Sobic001G370300 Sobic001G370300 Sobic005G178700--Sobic001G370300 Sobic005G178700--Sobic004G226900 Sobic009G096100 Sobic009G096100 Sobic008G056900--Sobic009G096100 Sobic001G485600 Sobic001G485600 Sobic008G056900--Sobic001G485600 Sobic008G081600 Sobic008G081600 Sobic008G056900--Sobic008G081600 Sobic007G000400 Sobic007G000400 Sobic008G056900--Sobic007G000400 Sobic002G344500 Sobic002G344500 Sobic008G056900--Sobic002G344500 Sobic007G197400 Sobic007G197400 Sobic008G056900--Sobic007G197400 Sobic008G056900--Sobic004G227100 Sobic007G077700 Sobic007G077700 Sobic008G056900--Sobic007G077700 Sobic001G087100 Sobic001G087100 Sobic008G056900--Sobic001G087100 Sobic001G040600 Sobic001G040600 Sobic006G271900--Sobic001G040600 Sobic007G060600 Sobic007G060600 Sobic006G271900--Sobic007G060600 Sobic009G253200 Sobic009G253200 Sobic006G271900--Sobic009G253200 Sobic001G049800 Sobic001G049800 Sobic006G271900--Sobic001G049800 Sobic006G111200 Sobic006G111200 Sobic006G271900--Sobic006G111200 Sobic002G251800 Sobic002G251800 Sobic006G271900--Sobic002G251800 Sobic001G480400 Sobic001G480400 Sobic006G271900--Sobic001G480400 Sobic005G028300 Sobic005G028300 Sobic006G271900--Sobic005G028300 Sobic001G081300 Sobic001G081300 Sobic006G271900--Sobic001G081300 Sobic007G185600--Sobic007G060600 Sobic007G185600--Sobic004G036700 Sobic007G185600--Sobic001G401400 Sobic007G185600--Sobic004G226900 Sobic007G185600--Sobic004G227100 Sobic007G185600--Sobic001G049800 Sobic007G185600--Sobic006G271900 Sobic003G425100 Sobic003G425100 Sobic007G185600--Sobic003G425100 Sobic007G185600--Sobic001G040600 Sobic004G226900--Sobic007G185600 Sobic004G226900--Sobic004G227100 Sobic004G226900--Sobic005G178700 Sobic004G226900--Sobic006G111200 Sobic001G061800 Sobic001G061800 Sobic004G226900--Sobic001G061800 Sobic003G189333 Sobic003G189333 Sobic004G226900--Sobic003G189333 Sobic004G226900--Sobic001G401400 Sobic004G226900--Sobic003G223500 Sobic004G226900--Sobic001G081300 Sobic006G226300 Sobic006G226300 Sobic010G015700--Sobic006G226300 Sobic001G334100 Sobic001G334100 Sobic010G015700--Sobic001G334100 Sobic003G184400 Sobic003G184400 Sobic010G015700--Sobic003G184400 Sobic005G009200 Sobic005G009200 Sobic010G015700--Sobic005G009200 Sobic005G199200 Sobic005G199200 Sobic010G015700--Sobic005G199200 Sobic006G223400 Sobic006G223400 Sobic010G015700--Sobic006G223400 Sobic002G177500 Sobic002G177500 Sobic010G015700--Sobic002G177500 Sobic002G142600 Sobic002G142600 Sobic010G015700--Sobic002G142600 Sobic010G015700--Sobic004G227100 Sobic005G229000 Sobic005G229000 Sobic004G077000--Sobic005G229000 Sobic001G428400 Sobic001G428400 Sobic004G077000--Sobic001G428400 Sobic002G362300 Sobic002G362300 Sobic004G077000--Sobic002G362300 Sobic003G442000 Sobic003G442000 Sobic004G077000--Sobic003G442000 Sobic008G034600 Sobic008G034600 Sobic004G077000--Sobic008G034600 Sobic002G157200 Sobic002G157200 Sobic004G077000--Sobic002G157200 Sobic009G225200 Sobic009G225200 Sobic004G077000--Sobic009G225200 Sobic004G077000--Sobic005G009200 Sobic007G224900 Sobic007G224900 Sobic004G077000--Sobic007G224900 Sobic002G262100 Sobic002G262100 Sobic002G399200--Sobic002G262100 Sobic008G163500 Sobic008G163500 Sobic002G399200--Sobic008G163500 Sobic009G235200 Sobic009G235200 Sobic002G399200--Sobic009G235200 Sobic004G173100 Sobic004G173100 Sobic002G399200--Sobic004G173100 Sobic002G399200--Sobic003G425100 Sobic002G399200--Sobic002G177500 Sobic002G399200--Sobic006G226300 Sobic009G163600 Sobic009G163600 Sobic002G399200--Sobic009G163600 Sobic009G040500 Sobic009G040500 Sobic002G399200--Sobic009G040500 Sobic005G028100 Sobic005G028100 Sobic004G036700--Sobic005G028100 Sobic004G036700--Sobic001G401400 Sobic001G422500 Sobic001G422500 Sobic004G036700--Sobic001G422500 Sobic006G225400 Sobic006G225400 Sobic004G036700--Sobic006G225400 Sobic004G036700--Sobic008G163500 Sobic003G123200 Sobic003G123200 Sobic004G036700--Sobic003G123200 Sobic004G036700--Sobic003G425100 Sobic006G198600 Sobic006G198600 Sobic004G036700--Sobic006G198600 Sobic010G205900 Sobic010G205900 Sobic004G036700--Sobic010G205900
Octagon: transcription factors


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