Gene annotation
Transcriptome id Sobic.005G178700.1
Synonym Sb05g023780
Functional annotation OsFBX135 - F-box domain containing protein, expressed
UniProt C5Y5V8
Pfam -
Panther DB PTHR32212 PTHR32212:SF75
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G53840 : F-box/RNI-like/FBD-like domains-containing protein
RAP-DB (Rice) LOC_Os04g35940.1 : OsFBX135 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU3Hr1G115660.1
Wheat TraesCS5B02G538000 , TraesCS4A02G325200 , TraesCS4A02G325200
Populus -


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cDNA sequences
Sobic.005G178700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G227100 survival motor neuron containing protein, expressed K13130: GEMIN2, gem associated protein 2
2 Sobic.003G223500 WD domain, G-beta repeat domain containing protein, expressed K14299: nucleoporin SEH1
3 Sobic.007G143500 splicing factor 3B subunit 5, putative, expressed K12832: SF3B5, splicing factor 3B subunit 5
4 Sobic.004G235500 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
5 Sobic.001G401400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
6 Sobic.006G067900 expressed protein -
7 Sobic.007G030600 NOL1/NOP2/sun family protein, putative, expressed -
8 Sobic.001G370300 WD domain, G-beta repeat domain containing protein, expressed K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
9 Sobic.004G226900 expressed protein -
10 Sobic.004G077000 expressed protein -
11 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase
12 Sobic.003G140900 OsFBL33 - F-box domain and LRR containing protein, expressed -
13 Sobic.001G061800 RFC3 - Putative clamp loader of PCNA, replication factor C subunit 3, expressed K10756: replication factor C subunit 3/5
14 Sobic.003G330200 cupin, RmlC-type, putative, expressed -
15 Sobic.006G242300 - -
16 Sobic.001G230200 inosine triphosphate pyrophosphatase, putative, expressed K01519: inosine triphosphate pyrophosphatase
17 Sobic.001G107300 WD repeat-containing protein 5, putative, expressed K14963: WDR5, SWD3, COMPASS component SWD3
18 Sobic.010G123700 expressed protein -
19 Sobic.002G183300 GTP binding protein, putative, expressed -
20 Sobic.003G043100 ribosome biogenesis regulatory protein, putative, expressed K14852: regulator of ribosome biosynthesis


Gene co-expression network
sample Sobic005G178700 Sobic005G178700 Sobic004G227100 Sobic004G227100 Sobic005G178700--Sobic004G227100 Sobic003G223500 Sobic003G223500 Sobic005G178700--Sobic003G223500 Sobic007G143500 Sobic007G143500 Sobic005G178700--Sobic007G143500 Sobic004G235500 Sobic004G235500 Sobic005G178700--Sobic004G235500 Sobic001G401400 Sobic001G401400 Sobic005G178700--Sobic001G401400 Sobic006G067900 Sobic006G067900 Sobic005G178700--Sobic006G067900 Sobic007G030600 Sobic007G030600 Sobic005G178700--Sobic007G030600 Sobic001G370300 Sobic001G370300 Sobic005G178700--Sobic001G370300 Sobic004G226900 Sobic004G226900 Sobic005G178700--Sobic004G226900 Sobic004G227100--Sobic005G178700 Sobic008G056900 Sobic008G056900 Sobic004G227100--Sobic008G056900 Sobic006G271900 Sobic006G271900 Sobic004G227100--Sobic006G271900 Sobic007G185600 Sobic007G185600 Sobic004G227100--Sobic007G185600 Sobic004G227100--Sobic004G226900 Sobic010G015700 Sobic010G015700 Sobic004G227100--Sobic010G015700 Sobic004G077000 Sobic004G077000 Sobic004G227100--Sobic004G077000 Sobic002G399200 Sobic002G399200 Sobic004G227100--Sobic002G399200 Sobic004G036700 Sobic004G036700 Sobic004G227100--Sobic004G036700 Sobic001G061800 Sobic001G061800 Sobic003G223500--Sobic001G061800 Sobic003G223500--Sobic005G178700 Sobic004G011000 Sobic004G011000 Sobic003G223500--Sobic004G011000 Sobic001G226000 Sobic001G226000 Sobic003G223500--Sobic001G226000 Sobic001G168100 Sobic001G168100 Sobic003G223500--Sobic001G168100 Sobic002G334600 Sobic002G334600 Sobic003G223500--Sobic002G334600 Sobic007G043400 Sobic007G043400 Sobic003G223500--Sobic007G043400 Sobic007G053400 Sobic007G053400 Sobic003G223500--Sobic007G053400 Sobic002G218700 Sobic002G218700 Sobic003G223500--Sobic002G218700 Sobic001G334100 Sobic001G334100 Sobic007G143500--Sobic001G334100 Sobic004G307500 Sobic004G307500 Sobic007G143500--Sobic004G307500 Sobic001G168900 Sobic001G168900 Sobic007G143500--Sobic001G168900 Sobic001G007800 Sobic001G007800 Sobic007G143500--Sobic001G007800 Sobic001G416700 Sobic001G416700 Sobic007G143500--Sobic001G416700 Sobic007G143500--Sobic005G178700 Sobic008G098600 Sobic008G098600 Sobic007G143500--Sobic008G098600 Sobic002G005000 Sobic002G005000 Sobic007G143500--Sobic002G005000 Sobic007G143500--Sobic004G235500 Sobic010G247400 Sobic010G247400 Sobic004G235500--Sobic010G247400 Sobic004G235500--Sobic005G178700 Sobic004G235500--Sobic007G143500 Sobic004G348100 Sobic004G348100 Sobic004G235500--Sobic004G348100 Sobic004G235500--Sobic004G077000 Sobic001G127100 Sobic001G127100 Sobic004G235500--Sobic001G127100 Sobic009G093400 Sobic009G093400 Sobic004G235500--Sobic009G093400 Sobic001G230200 Sobic001G230200 Sobic004G235500--Sobic001G230200 Sobic009G133400 Sobic009G133400 Sobic004G235500--Sobic009G133400 Sobic001G401400--Sobic004G036700 Sobic006G198600 Sobic006G198600 Sobic001G401400--Sobic006G198600 Sobic005G028100 Sobic005G028100 Sobic001G401400--Sobic005G028100 Sobic003G322200 Sobic003G322200 Sobic001G401400--Sobic003G322200 Sobic003G407800 Sobic003G407800 Sobic001G401400--Sobic003G407800 Sobic001G372800 Sobic001G372800 Sobic001G401400--Sobic001G372800 Sobic006G225400 Sobic006G225400 Sobic001G401400--Sobic006G225400 Sobic001G422500 Sobic001G422500 Sobic001G401400--Sobic001G422500 Sobic003G407600 Sobic003G407600 Sobic001G401400--Sobic003G407600 Sobic006G067900--Sobic005G178700 Sobic006G067900--Sobic001G401400 Sobic002G014600 Sobic002G014600 Sobic006G067900--Sobic002G014600 Sobic006G067900--Sobic002G399200 Sobic006G067900--Sobic010G247400 Sobic006G067900--Sobic001G370300 Sobic006G067900--Sobic001G422500 Sobic006G067900--Sobic004G235500 Sobic006G242300 Sobic006G242300 Sobic006G067900--Sobic006G242300 Sobic003G113400 Sobic003G113400 Sobic007G030600--Sobic003G113400 Sobic003G028400 Sobic003G028400 Sobic007G030600--Sobic003G028400 Sobic008G039000 Sobic008G039000 Sobic007G030600--Sobic008G039000 Sobic007G146600 Sobic007G146600 Sobic007G030600--Sobic007G146600 Sobic002G182000 Sobic002G182000 Sobic007G030600--Sobic002G182000 Sobic002G399900 Sobic002G399900 Sobic007G030600--Sobic002G399900 Sobic003G113900 Sobic003G113900 Sobic007G030600--Sobic003G113900 Sobic001G413100 Sobic001G413100 Sobic007G030600--Sobic001G413100 Sobic001G343000 Sobic001G343000 Sobic007G030600--Sobic001G343000 Sobic002G077900 Sobic002G077900 Sobic001G370300--Sobic002G077900 Sobic002G177500 Sobic002G177500 Sobic001G370300--Sobic002G177500 Sobic006G245700 Sobic006G245700 Sobic001G370300--Sobic006G245700 Sobic001G370300--Sobic010G247400 Sobic001G285300 Sobic001G285300 Sobic001G370300--Sobic001G285300 Sobic003G439800 Sobic003G439800 Sobic001G370300--Sobic003G439800 Sobic001G023800 Sobic001G023800 Sobic001G370300--Sobic001G023800 Sobic006G252100 Sobic006G252100 Sobic001G370300--Sobic006G252100 Sobic004G057800 Sobic004G057800 Sobic001G370300--Sobic004G057800 Sobic004G226900--Sobic007G185600 Sobic004G226900--Sobic004G227100 Sobic004G226900--Sobic005G178700 Sobic006G111200 Sobic006G111200 Sobic004G226900--Sobic006G111200 Sobic004G226900--Sobic001G061800 Sobic003G189333 Sobic003G189333 Sobic004G226900--Sobic003G189333 Sobic004G226900--Sobic001G401400 Sobic004G226900--Sobic003G223500 Sobic001G081300 Sobic001G081300 Sobic004G226900--Sobic001G081300
Octagon: transcription factors


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