Gene annotation
Transcriptome id Sobic.006G067900.1
Synonym Sb06g015450
Functional annotation expressed protein
UniProt C5YFT5
Pfam -
Panther DB PTHR36047 PTHR36047:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G04190 : -
RAP-DB (Rice) LOC_Os04g33510.2 : expressed protein
MaizeGDB (Corn) Zm00025a011535
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G067900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G178700 OsFBX135 - F-box domain containing protein, expressed -
2 Sobic.001G401400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
3 Sobic.002G014600 OsFBX285 - F-box domain containing protein, expressed -
4 Sobic.002G399200 - K14779: DDX52, ATP-dependent RNA helicase DDX52/ROK1
5 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
6 Sobic.001G370300 WD domain, G-beta repeat domain containing protein, expressed K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
7 Sobic.001G422500 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
8 Sobic.004G235500 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
9 Sobic.006G242300 - -
10 Sobic.004G285200 expressed protein -
11 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase
12 Sobic.003G407600 Mak16 protein domain containing protein, expressed K14831: protein MAK16
13 Sobic.004G227100 survival motor neuron containing protein, expressed K13130: GEMIN2, gem associated protein 2
14 Sobic.008G080000 leucine-rich repeat family protein, putative, expressed -
15 Sobic.006G272200 cleavage and polyadenylation specificity factor subunit 5, putative, expressed K14397: NUDT21, CPSF5, cleavage and polyadenylation specificity factor subunit 5
16 Sobic.003G330200 cupin, RmlC-type, putative, expressed -
17 Sobic.001G230200 inosine triphosphate pyrophosphatase, putative, expressed K01519: inosine triphosphate pyrophosphatase
18 Sobic.004G307500 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
19 Sobic.002G192500 ES43 protein, putative, expressed -
20 Sobic.010G203300 paxneb-related protein, putative, expressed K11375: elongator complex protein 4


Gene co-expression network
sample Sobic006G067900 Sobic006G067900 Sobic005G178700 Sobic005G178700 Sobic006G067900--Sobic005G178700 Sobic001G401400 Sobic001G401400 Sobic006G067900--Sobic001G401400 Sobic002G014600 Sobic002G014600 Sobic006G067900--Sobic002G014600 Sobic002G399200 Sobic002G399200 Sobic006G067900--Sobic002G399200 Sobic010G247400 Sobic010G247400 Sobic006G067900--Sobic010G247400 Sobic001G370300 Sobic001G370300 Sobic006G067900--Sobic001G370300 Sobic001G422500 Sobic001G422500 Sobic006G067900--Sobic001G422500 Sobic004G235500 Sobic004G235500 Sobic006G067900--Sobic004G235500 Sobic006G242300 Sobic006G242300 Sobic006G067900--Sobic006G242300 Sobic004G227100 Sobic004G227100 Sobic005G178700--Sobic004G227100 Sobic003G223500 Sobic003G223500 Sobic005G178700--Sobic003G223500 Sobic007G143500 Sobic007G143500 Sobic005G178700--Sobic007G143500 Sobic005G178700--Sobic004G235500 Sobic005G178700--Sobic001G401400 Sobic005G178700--Sobic006G067900 Sobic007G030600 Sobic007G030600 Sobic005G178700--Sobic007G030600 Sobic005G178700--Sobic001G370300 Sobic004G226900 Sobic004G226900 Sobic005G178700--Sobic004G226900 Sobic004G036700 Sobic004G036700 Sobic001G401400--Sobic004G036700 Sobic006G198600 Sobic006G198600 Sobic001G401400--Sobic006G198600 Sobic005G028100 Sobic005G028100 Sobic001G401400--Sobic005G028100 Sobic003G322200 Sobic003G322200 Sobic001G401400--Sobic003G322200 Sobic003G407800 Sobic003G407800 Sobic001G401400--Sobic003G407800 Sobic001G372800 Sobic001G372800 Sobic001G401400--Sobic001G372800 Sobic006G225400 Sobic006G225400 Sobic001G401400--Sobic006G225400 Sobic001G401400--Sobic001G422500 Sobic003G407600 Sobic003G407600 Sobic001G401400--Sobic003G407600 Sobic004G186000 Sobic004G186000 Sobic002G014600--Sobic004G186000 Sobic002G280600 Sobic002G280600 Sobic002G014600--Sobic002G280600 Sobic008G127400 Sobic008G127400 Sobic002G014600--Sobic008G127400 Sobic006G272200 Sobic006G272200 Sobic002G014600--Sobic006G272200 Sobic002G394800 Sobic002G394800 Sobic002G014600--Sobic002G394800 Sobic003G439800 Sobic003G439800 Sobic002G014600--Sobic003G439800 Sobic010G232900 Sobic010G232900 Sobic002G014600--Sobic010G232900 Sobic010G037400 Sobic010G037400 Sobic002G014600--Sobic010G037400 Sobic002G014600--Sobic006G067900 Sobic002G262100 Sobic002G262100 Sobic002G399200--Sobic002G262100 Sobic008G163500 Sobic008G163500 Sobic002G399200--Sobic008G163500 Sobic009G235200 Sobic009G235200 Sobic002G399200--Sobic009G235200 Sobic004G173100 Sobic004G173100 Sobic002G399200--Sobic004G173100 Sobic003G425100 Sobic003G425100 Sobic002G399200--Sobic003G425100 Sobic002G177500 Sobic002G177500 Sobic002G399200--Sobic002G177500 Sobic006G226300 Sobic006G226300 Sobic002G399200--Sobic006G226300 Sobic009G163600 Sobic009G163600 Sobic002G399200--Sobic009G163600 Sobic009G040500 Sobic009G040500 Sobic002G399200--Sobic009G040500 Sobic001G249700 Sobic001G249700 Sobic010G247400--Sobic001G249700 Sobic001G259000 Sobic001G259000 Sobic010G247400--Sobic001G259000 Sobic001G527300 Sobic001G527300 Sobic010G247400--Sobic001G527300 Sobic002G341800 Sobic002G341800 Sobic010G247400--Sobic002G341800 Sobic002G077900 Sobic002G077900 Sobic010G247400--Sobic002G077900 Sobic010G247400--Sobic001G370300 Sobic010G247400--Sobic003G407600 Sobic006G233300 Sobic006G233300 Sobic010G247400--Sobic006G233300 Sobic009G033900 Sobic009G033900 Sobic010G247400--Sobic009G033900 Sobic001G370300--Sobic002G077900 Sobic001G370300--Sobic002G177500 Sobic006G245700 Sobic006G245700 Sobic001G370300--Sobic006G245700 Sobic001G370300--Sobic010G247400 Sobic001G285300 Sobic001G285300 Sobic001G370300--Sobic001G285300 Sobic001G370300--Sobic003G439800 Sobic001G023800 Sobic001G023800 Sobic001G370300--Sobic001G023800 Sobic006G252100 Sobic006G252100 Sobic001G370300--Sobic006G252100 Sobic004G057800 Sobic004G057800 Sobic001G370300--Sobic004G057800 Sobic001G422500--Sobic004G036700 Sobic001G422500--Sobic008G163500 Sobic002G378100 Sobic002G378100 Sobic001G422500--Sobic002G378100 Sobic006G231800 Sobic006G231800 Sobic001G422500--Sobic006G231800 Sobic010G083900 Sobic010G083900 Sobic001G422500--Sobic010G083900 Sobic001G422500--Sobic002G262100 Sobic009G101200 Sobic009G101200 Sobic001G422500--Sobic009G101200 Sobic001G422500--Sobic006G198600 Sobic003G123200 Sobic003G123200 Sobic001G422500--Sobic003G123200 Sobic004G235500--Sobic010G247400 Sobic004G235500--Sobic005G178700 Sobic004G235500--Sobic007G143500 Sobic004G348100 Sobic004G348100 Sobic004G235500--Sobic004G348100 Sobic004G077000 Sobic004G077000 Sobic004G235500--Sobic004G077000 Sobic001G127100 Sobic001G127100 Sobic004G235500--Sobic001G127100 Sobic009G093400 Sobic009G093400 Sobic004G235500--Sobic009G093400 Sobic001G230200 Sobic001G230200 Sobic004G235500--Sobic001G230200 Sobic009G133400 Sobic009G133400 Sobic004G235500--Sobic009G133400 Sobic001G041200 Sobic001G041200 Sobic006G242300--Sobic001G041200 Sobic003G045400 Sobic003G045400 Sobic006G242300--Sobic003G045400 Sobic006G056600 Sobic006G056600 Sobic006G242300--Sobic006G056600 Sobic006G242300--Sobic009G133400 Sobic003G119400 Sobic003G119400 Sobic006G242300--Sobic003G119400 Sobic001G067900 Sobic001G067900 Sobic006G242300--Sobic001G067900 Sobic006G242300--Sobic009G033900 Sobic004G072800 Sobic004G072800 Sobic006G242300--Sobic004G072800 Sobic003G043100 Sobic003G043100 Sobic006G242300--Sobic003G043100
Octagon: transcription factors


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