Gene annotation
Transcriptome id Sobic.001G422500.1
Synonym Sb01g039720
Functional annotation N-dimethylguanosine tRNA methyltransferase, putative, expressed
UniProt C5WQ10
Pfam PF02005
Panther DB PTHR10631:SF3 PTHR10631
NCBI CDD -
KEGG Orthology K00555; TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
Gene Ontology GO:0003723; RNA binding GO:0004809tRNA (guanine-N2-)-methyltransferase activity GO:0008033tRNA processing


Orthologs (automatic annotation)
TAIR AT5G15810 : N2,N2-dimethylguanosine tRNA methyltransferase
RAP-DB (Rice) LOC_Os03g57280.1 : N-dimethylguanosine tRNA methyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a001810 , Zm00025a008684
Brachypodium KQK22353 , PNT66707 , PNT66709 , PNT66708 , KQK20895 , PNT66710 , KQJ95238
Barley HORVU4Hr1G059980.5 , HORVU4Hr1G059980.4 , HORVU4Hr1G059980.7 , HORVU4Hr1G059980.6 , HORVU4Hr1G059980.8 , HORVU4Hr1G059980.1 , HORVU4Hr1G059980.3 , HORVU4Hr1G059980.2 , HORVU4Hr1G059990.1
Wheat TraesCS4D02G209100 , TraesCS4B02G208200 , TraesCS4A02G096200
Populus PNT40779


JBrowse

Open New Page


cDNA sequences
Sobic.001G422500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase
2 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
3 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
4 Sobic.006G231800 double-strand break repair protein MRE11, putative, expressed K10865: double-strand break repair protein MRE11
5 Sobic.010G083900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed -
6 Sobic.002G262100 - K13181: DDX27, ATP-dependent RNA helicase DDX27
7 Sobic.009G101200 expressed protein K17973: NAA25, N-terminal acetyltransferase B complex non-catalytic subunit
8 Sobic.006G198600 WD domain, G-beta repeat domain containing protein, expressed K14555: UTP13, U3 small nucleolar RNA-associated protein 13
9 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
10 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
11 Sobic.001G119600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
12 Sobic.001G401400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
13 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
14 Sobic.001G429600 HEAT repeat family protein, putative, expressed -
15 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
16 Sobic.010G224700 - K17680: twinkle protein
17 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
18 Sobic.004G030800 expressed protein -
19 Sobic.001G322600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22


Gene co-expression network
sample Sobic001G422500 Sobic001G422500 Sobic004G036700 Sobic004G036700 Sobic001G422500--Sobic004G036700 Sobic008G163500 Sobic008G163500 Sobic001G422500--Sobic008G163500 Sobic002G378100 Sobic002G378100 Sobic001G422500--Sobic002G378100 Sobic006G231800 Sobic006G231800 Sobic001G422500--Sobic006G231800 Sobic010G083900 Sobic010G083900 Sobic001G422500--Sobic010G083900 Sobic002G262100 Sobic002G262100 Sobic001G422500--Sobic002G262100 Sobic009G101200 Sobic009G101200 Sobic001G422500--Sobic009G101200 Sobic006G198600 Sobic006G198600 Sobic001G422500--Sobic006G198600 Sobic003G123200 Sobic003G123200 Sobic001G422500--Sobic003G123200 Sobic005G028100 Sobic005G028100 Sobic004G036700--Sobic005G028100 Sobic001G401400 Sobic001G401400 Sobic004G036700--Sobic001G401400 Sobic004G036700--Sobic001G422500 Sobic006G225400 Sobic006G225400 Sobic004G036700--Sobic006G225400 Sobic004G036700--Sobic008G163500 Sobic004G036700--Sobic003G123200 Sobic003G425100 Sobic003G425100 Sobic004G036700--Sobic003G425100 Sobic004G036700--Sobic006G198600 Sobic010G205900 Sobic010G205900 Sobic004G036700--Sobic010G205900 Sobic008G163500--Sobic005G028100 Sobic008G163500--Sobic003G123200 Sobic009G246500 Sobic009G246500 Sobic008G163500--Sobic009G246500 Sobic008G163500--Sobic010G205900 Sobic008G049100 Sobic008G049100 Sobic008G163500--Sobic008G049100 Sobic005G098800 Sobic005G098800 Sobic008G163500--Sobic005G098800 Sobic008G163500--Sobic001G422500 Sobic010G224700 Sobic010G224700 Sobic008G163500--Sobic010G224700 Sobic008G163500--Sobic004G036700 Sobic006G185200 Sobic006G185200 Sobic002G378100--Sobic006G185200 Sobic006G128400 Sobic006G128400 Sobic002G378100--Sobic006G128400 Sobic004G151000 Sobic004G151000 Sobic002G378100--Sobic004G151000 Sobic002G378100--Sobic010G224700 Sobic002G378100--Sobic010G083900 Sobic002G092050 Sobic002G092050 Sobic002G378100--Sobic002G092050 Sobic004G027300 Sobic004G027300 Sobic002G378100--Sobic004G027300 Sobic002G378100--Sobic001G422500 Sobic009G213200 Sobic009G213200 Sobic002G378100--Sobic009G213200 Sobic006G231800--Sobic001G422500 Sobic009G145101 Sobic009G145101 Sobic006G231800--Sobic009G145101 Sobic006G231800--Sobic002G378100 Sobic006G231800--Sobic006G185200 Sobic006G231800--Sobic009G213200 Sobic006G049600 Sobic006G049600 Sobic006G231800--Sobic006G049600 Sobic001G119600 Sobic001G119600 Sobic006G231800--Sobic001G119600 Sobic010G003400 Sobic010G003400 Sobic006G231800--Sobic010G003400 Sobic002G373950 Sobic002G373950 Sobic006G231800--Sobic002G373950 Sobic010G083900--Sobic002G378100 Sobic001G322600 Sobic001G322600 Sobic010G083900--Sobic001G322600 Sobic001G049800 Sobic001G049800 Sobic010G083900--Sobic001G049800 Sobic010G083900--Sobic001G422500 Sobic010G083900--Sobic010G224700 Sobic010G083900--Sobic004G151000 Sobic003G014700 Sobic003G014700 Sobic010G083900--Sobic003G014700 Sobic005G028300 Sobic005G028300 Sobic010G083900--Sobic005G028300 Sobic010G083900--Sobic001G119600 Sobic002G262100--Sobic001G119600 Sobic002G399200 Sobic002G399200 Sobic002G262100--Sobic002G399200 Sobic002G262100--Sobic002G378100 Sobic002G262100--Sobic008G163500 Sobic002G262100--Sobic001G422500 Sobic001G157300 Sobic001G157300 Sobic002G262100--Sobic001G157300 Sobic004G173100 Sobic004G173100 Sobic002G262100--Sobic004G173100 Sobic002G262100--Sobic003G425100 Sobic002G262100--Sobic006G198600 Sobic006G086600 Sobic006G086600 Sobic009G101200--Sobic006G086600 Sobic009G101200--Sobic010G003400 Sobic001G145400 Sobic001G145400 Sobic009G101200--Sobic001G145400 Sobic001G259000 Sobic001G259000 Sobic009G101200--Sobic001G259000 Sobic004G085000 Sobic004G085000 Sobic009G101200--Sobic004G085000 Sobic001G052400 Sobic001G052400 Sobic009G101200--Sobic001G052400 Sobic009G101200--Sobic009G246500 Sobic001G429600 Sobic001G429600 Sobic009G101200--Sobic001G429600 Sobic009G101200--Sobic006G049600 Sobic006G198600--Sobic003G123200 Sobic009G071700 Sobic009G071700 Sobic006G198600--Sobic009G071700 Sobic006G198600--Sobic001G401400 Sobic006G198600--Sobic008G163500 Sobic006G251600 Sobic006G251600 Sobic006G198600--Sobic006G251600 Sobic006G198600--Sobic008G049100 Sobic006G198600--Sobic003G425100 Sobic006G198600--Sobic004G036700 Sobic006G198600--Sobic001G157300 Sobic003G123200--Sobic005G098800 Sobic003G123200--Sobic008G163500 Sobic003G123200--Sobic010G205900 Sobic003G123200--Sobic009G246500 Sobic003G123200--Sobic008G049100 Sobic003G123200--Sobic005G028100 Sobic002G423400 Sobic002G423400 Sobic003G123200--Sobic002G423400 Sobic003G123200--Sobic006G198600 Sobic003G123200--Sobic010G224700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.