Gene annotation
Transcriptome id Sobic.010G083900.1
Synonym Sb10g007270
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed
UniProt C5Z6J1
Pfam PF12695
Panther DB PTHR11731 PTHR11731:SF126
NCBI CDD KOG2100; Dipeptidyl aminopeptidase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G36210 : alpha/beta-Hydrolases superfamily protein
RAP-DB (Rice) LOC_Os06g11180.1 : OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed
MaizeGDB (Corn) Zm00025a049560 , Zm00025a011664
Brachypodium KQK19006
Barley HORVU7Hr1G036000.1 , HORVU7Hr1G036000.2 , HORVU7Hr1G036000.3 , HORVU7Hr1G036000.4 , HORVU7Hr1G036000.5 , HORVU7Hr1G036000.6 , HORVU7Hr1G036000.7 , HORVU7Hr1G036000.8 , HORVU7Hr1G036000.9 , HORVU7Hr1G035900.2 , HORVU7Hr1G035900.5 , HORVU7Hr1G036000.18 , HORVU7Hr1G036000.19 , HORVU7Hr1G036000.12 , HORVU7Hr1G036000.13 , HORVU7Hr1G036000.10 , HORVU7Hr1G036000.11 , HORVU7Hr1G036000.16 , HORVU7Hr1G036000.17 , HORVU7Hr1G036000.14 , HORVU7Hr1G036000.15 , HORVU7Hr1G035900.12 , HORVU7Hr1G035900.13 , HORVU7Hr1G035900.11 , HORVU7Hr1G035900.14 , HORVU7Hr1G035900.15 , HORVU7Hr1G035900.10 , HORVU7Hr1G035900.1 , HORVU7Hr1G035900.3 , HORVU7Hr1G035900.4 , HORVU7Hr1G035900.6 , HORVU7Hr1G035900.7 , HORVU7Hr1G035900.8 , HORVU7Hr1G035900.9 , HORVU3Hr1G002540.6 , HORVU3Hr1G002540.7 , HORVU3Hr1G002540.4 , HORVU3Hr1G002540.5 , HORVU3Hr1G002540.2 , HORVU3Hr1G002540.3 , HORVU3Hr1G002540.1 , HORVU3Hr1G002540.8
Wheat TraesCS7B02G078600 , TraesCS7A02G173300 , TraesCS7D02G174700 , TraesCS3A02G016400 , TraesCS3D02G028200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
2 Sobic.001G322600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.001G049800 DDT domain containing protein, putative, expressed -
4 Sobic.001G422500 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
5 Sobic.010G224700 - K17680: twinkle protein
6 Sobic.004G151000 RecF/RecN/SMC N terminal domain containing protein, expressed K10866: DNA repair protein RAD50
7 Sobic.003G014700 pentatricopeptide, putative, expressed -
8 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
9 Sobic.001G119600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
10 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
11 Sobic.006G231800 double-strand break repair protein MRE11, putative, expressed K10865: double-strand break repair protein MRE11
12 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase
13 Sobic.001G401400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
14 Sobic.001G544300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed -
15 Sobic.006G198600 WD domain, G-beta repeat domain containing protein, expressed K14555: UTP13, U3 small nucleolar RNA-associated protein 13
16 Sobic.006G185200 RNA polymerase IV subunit, putative, expressed K16250: DNA-directed RNA polymerase IV subunit 1
17 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
18 Sobic.002G262100 - K13181: DDX27, ATP-dependent RNA helicase DDX27
19 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -
20 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)


Gene co-expression network
sample Sobic010G083900 Sobic010G083900 Sobic002G378100 Sobic002G378100 Sobic010G083900--Sobic002G378100 Sobic001G322600 Sobic001G322600 Sobic010G083900--Sobic001G322600 Sobic001G049800 Sobic001G049800 Sobic010G083900--Sobic001G049800 Sobic001G422500 Sobic001G422500 Sobic010G083900--Sobic001G422500 Sobic010G224700 Sobic010G224700 Sobic010G083900--Sobic010G224700 Sobic004G151000 Sobic004G151000 Sobic010G083900--Sobic004G151000 Sobic003G014700 Sobic003G014700 Sobic010G083900--Sobic003G014700 Sobic005G028300 Sobic005G028300 Sobic010G083900--Sobic005G028300 Sobic001G119600 Sobic001G119600 Sobic010G083900--Sobic001G119600 Sobic006G185200 Sobic006G185200 Sobic002G378100--Sobic006G185200 Sobic006G128400 Sobic006G128400 Sobic002G378100--Sobic006G128400 Sobic002G378100--Sobic004G151000 Sobic002G378100--Sobic010G224700 Sobic002G378100--Sobic010G083900 Sobic002G092050 Sobic002G092050 Sobic002G378100--Sobic002G092050 Sobic004G027300 Sobic004G027300 Sobic002G378100--Sobic004G027300 Sobic002G378100--Sobic001G422500 Sobic009G213200 Sobic009G213200 Sobic002G378100--Sobic009G213200 Sobic001G322600--Sobic010G083900 Sobic009G163600 Sobic009G163600 Sobic001G322600--Sobic009G163600 Sobic002G344500 Sobic002G344500 Sobic001G322600--Sobic002G344500 Sobic001G322600--Sobic003G014700 Sobic004G354000 Sobic004G354000 Sobic001G322600--Sobic004G354000 Sobic001G322600--Sobic010G224700 Sobic003G407600 Sobic003G407600 Sobic001G322600--Sobic003G407600 Sobic001G322600--Sobic005G028300 Sobic001G322600--Sobic002G378100 Sobic007G060600 Sobic007G060600 Sobic001G049800--Sobic007G060600 Sobic001G049800--Sobic004G151000 Sobic001G049800--Sobic004G027300 Sobic001G544300 Sobic001G544300 Sobic001G049800--Sobic001G544300 Sobic001G049800--Sobic010G224700 Sobic006G111200 Sobic006G111200 Sobic001G049800--Sobic006G111200 Sobic006G059500 Sobic006G059500 Sobic001G049800--Sobic006G059500 Sobic001G049800--Sobic002G378100 Sobic001G049800--Sobic010G083900 Sobic004G036700 Sobic004G036700 Sobic001G422500--Sobic004G036700 Sobic008G163500 Sobic008G163500 Sobic001G422500--Sobic008G163500 Sobic001G422500--Sobic002G378100 Sobic006G231800 Sobic006G231800 Sobic001G422500--Sobic006G231800 Sobic001G422500--Sobic010G083900 Sobic002G262100 Sobic002G262100 Sobic001G422500--Sobic002G262100 Sobic009G101200 Sobic009G101200 Sobic001G422500--Sobic009G101200 Sobic006G198600 Sobic006G198600 Sobic001G422500--Sobic006G198600 Sobic003G123200 Sobic003G123200 Sobic001G422500--Sobic003G123200 Sobic010G224700--Sobic002G378100 Sobic008G017100 Sobic008G017100 Sobic010G224700--Sobic008G017100 Sobic010G224700--Sobic004G027300 Sobic010G224700--Sobic001G119600 Sobic010G224700--Sobic003G123200 Sobic010G224700--Sobic008G163500 Sobic010G224700--Sobic001G049800 Sobic003G425100 Sobic003G425100 Sobic010G224700--Sobic003G425100 Sobic003G199300 Sobic003G199300 Sobic010G224700--Sobic003G199300 Sobic004G151000--Sobic001G049800 Sobic004G151000--Sobic004G027300 Sobic004G151000--Sobic006G111200 Sobic004G151000--Sobic002G378100 Sobic004G151000--Sobic007G060600 Sobic002G112600 Sobic002G112600 Sobic004G151000--Sobic002G112600 Sobic001G453500 Sobic001G453500 Sobic004G151000--Sobic001G453500 Sobic004G151000--Sobic006G059500 Sobic007G059700 Sobic007G059700 Sobic004G151000--Sobic007G059700 Sobic003G014700--Sobic002G378100 Sobic003G014700--Sobic005G028300 Sobic003G014700--Sobic010G083900 Sobic003G014700--Sobic001G322600 Sobic001G391101 Sobic001G391101 Sobic003G014700--Sobic001G391101 Sobic004G027500 Sobic004G027500 Sobic003G014700--Sobic004G027500 Sobic002G423400 Sobic002G423400 Sobic003G014700--Sobic002G423400 Sobic005G012700 Sobic005G012700 Sobic003G014700--Sobic005G012700 Sobic003G419800 Sobic003G419800 Sobic003G014700--Sobic003G419800 Sobic002G389200 Sobic002G389200 Sobic005G028300--Sobic002G389200 Sobic003G051500 Sobic003G051500 Sobic005G028300--Sobic003G051500 Sobic002G251800 Sobic002G251800 Sobic005G028300--Sobic002G251800 Sobic001G001200 Sobic001G001200 Sobic005G028300--Sobic001G001200 Sobic005G028300--Sobic003G419800 Sobic005G028300--Sobic003G014700 Sobic005G028300--Sobic001G391101 Sobic002G084400 Sobic002G084400 Sobic005G028300--Sobic002G084400 Sobic005G028300--Sobic010G083900 Sobic001G119600--Sobic002G262100 Sobic001G119600--Sobic010G224700 Sobic001G119600--Sobic003G123200 Sobic001G119600--Sobic003G425100 Sobic001G119600--Sobic002G378100 Sobic001G119600--Sobic008G163500 Sobic008G049100 Sobic008G049100 Sobic001G119600--Sobic008G049100 Sobic001G119600--Sobic006G198600 Sobic001G119600--Sobic006G231800
Octagon: transcription factors


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