Gene annotation
Transcriptome id Sobic.010G224700.1,Sobic.010G224700.2
Synonym Sb10g026990
Functional annotation -
UniProt A0A194YKT5 , C5Z7R8
Pfam PF13481 PF13662
Panther DB PTHR12873
NCBI CDD -
KEGG Orthology K17680; twinkle protein
Gene Ontology GO:0003697; single-stranded DNA binding


Orthologs (automatic annotation)
TAIR AT1G30680 : toprim domain-containing protein
RAP-DB (Rice) LOC_Os06g45980.1 : toprim domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a041940
Brachypodium KQK17083
Barley HORVU7Hr1G107050.22 , HORVU7Hr1G107050.21 , HORVU7Hr1G107050.20 , HORVU7Hr1G107050.18 , HORVU7Hr1G107050.19 , HORVU7Hr1G107050.12 , HORVU7Hr1G107050.13 , HORVU7Hr1G107050.10 , HORVU7Hr1G107050.11 , HORVU7Hr1G107050.16 , HORVU7Hr1G107050.17 , HORVU7Hr1G107050.14 , HORVU7Hr1G107050.15 , HORVU7Hr1G107050.1 , HORVU7Hr1G107050.2 , HORVU7Hr1G107050.3 , HORVU7Hr1G107050.4 , HORVU7Hr1G107050.5 , HORVU7Hr1G107050.6 , HORVU7Hr1G107050.7 , HORVU7Hr1G107050.8 , HORVU7Hr1G107050.9
Wheat TraesCS7D02G454700 , TraesCS7D02G454700 , TraesCS7B02G368200 , TraesCS7B02G368200 , TraesCS7A02G466900
Populus -


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cDNA sequences
Sobic.010G224700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
2 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
3 Sobic.004G027300 expressed protein -
4 Sobic.001G119600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
5 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
6 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
7 Sobic.001G049800 DDT domain containing protein, putative, expressed -
8 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
9 Sobic.003G199300 down-regulated in metastasis family protein, expressed K14772: U3 small nucleolar RNA-associated protein 20
10 Sobic.002G423400 PPR repeat containing protein, expressed -
11 Sobic.004G151000 RecF/RecN/SMC N terminal domain containing protein, expressed K10866: DNA repair protein RAD50
12 Sobic.002G112600 zinc finger family protein, putative, expressed -
13 Sobic.004G119400 ATP-binding domain-containing protein, putative, expressed -
14 Sobic.006G128400 PPR repeat containing protein, expressed -
15 Sobic.005G098800 CIP111, putative, expressed K14575: AFG2, DRG1, AAA family ATPase
16 Sobic.006G140400 DNA mismatch repair protein, putative, expressed -
17 Sobic.001G544300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed -
18 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
19 Sobic.010G083900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed -
20 Sobic.007G014800 RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic010G224700 Sobic010G224700 Sobic002G378100 Sobic002G378100 Sobic010G224700--Sobic002G378100 Sobic008G017100 Sobic008G017100 Sobic010G224700--Sobic008G017100 Sobic004G027300 Sobic004G027300 Sobic010G224700--Sobic004G027300 Sobic001G119600 Sobic001G119600 Sobic010G224700--Sobic001G119600 Sobic003G123200 Sobic003G123200 Sobic010G224700--Sobic003G123200 Sobic008G163500 Sobic008G163500 Sobic010G224700--Sobic008G163500 Sobic001G049800 Sobic001G049800 Sobic010G224700--Sobic001G049800 Sobic003G425100 Sobic003G425100 Sobic010G224700--Sobic003G425100 Sobic003G199300 Sobic003G199300 Sobic010G224700--Sobic003G199300 Sobic006G185200 Sobic006G185200 Sobic002G378100--Sobic006G185200 Sobic006G128400 Sobic006G128400 Sobic002G378100--Sobic006G128400 Sobic004G151000 Sobic004G151000 Sobic002G378100--Sobic004G151000 Sobic002G378100--Sobic010G224700 Sobic010G083900 Sobic010G083900 Sobic002G378100--Sobic010G083900 Sobic002G092050 Sobic002G092050 Sobic002G378100--Sobic002G092050 Sobic002G378100--Sobic004G027300 Sobic001G422500 Sobic001G422500 Sobic002G378100--Sobic001G422500 Sobic009G213200 Sobic009G213200 Sobic002G378100--Sobic009G213200 Sobic004G119400 Sobic004G119400 Sobic008G017100--Sobic004G119400 Sobic006G269800 Sobic006G269800 Sobic008G017100--Sobic006G269800 Sobic008G017100--Sobic010G224700 Sobic008G017100--Sobic006G185200 Sobic002G079100 Sobic002G079100 Sobic008G017100--Sobic002G079100 Sobic008G017100--Sobic002G378100 Sobic004G351800 Sobic004G351800 Sobic008G017100--Sobic004G351800 Sobic007G171100 Sobic007G171100 Sobic008G017100--Sobic007G171100 Sobic008G147200 Sobic008G147200 Sobic008G017100--Sobic008G147200 Sobic004G027300--Sobic004G151000 Sobic004G027300--Sobic001G049800 Sobic004G027300--Sobic010G224700 Sobic007G060600 Sobic007G060600 Sobic004G027300--Sobic007G060600 Sobic004G027300--Sobic002G378100 Sobic004G027300--Sobic003G425100 Sobic001G453500 Sobic001G453500 Sobic004G027300--Sobic001G453500 Sobic007G059700 Sobic007G059700 Sobic004G027300--Sobic007G059700 Sobic002G112600 Sobic002G112600 Sobic004G027300--Sobic002G112600 Sobic002G262100 Sobic002G262100 Sobic001G119600--Sobic002G262100 Sobic001G119600--Sobic010G224700 Sobic001G119600--Sobic003G123200 Sobic001G119600--Sobic003G425100 Sobic001G119600--Sobic002G378100 Sobic001G119600--Sobic008G163500 Sobic008G049100 Sobic008G049100 Sobic001G119600--Sobic008G049100 Sobic006G198600 Sobic006G198600 Sobic001G119600--Sobic006G198600 Sobic006G231800 Sobic006G231800 Sobic001G119600--Sobic006G231800 Sobic005G098800 Sobic005G098800 Sobic003G123200--Sobic005G098800 Sobic003G123200--Sobic008G163500 Sobic010G205900 Sobic010G205900 Sobic003G123200--Sobic010G205900 Sobic009G246500 Sobic009G246500 Sobic003G123200--Sobic009G246500 Sobic003G123200--Sobic008G049100 Sobic005G028100 Sobic005G028100 Sobic003G123200--Sobic005G028100 Sobic002G423400 Sobic002G423400 Sobic003G123200--Sobic002G423400 Sobic003G123200--Sobic006G198600 Sobic003G123200--Sobic010G224700 Sobic008G163500--Sobic005G028100 Sobic008G163500--Sobic003G123200 Sobic008G163500--Sobic009G246500 Sobic008G163500--Sobic010G205900 Sobic008G163500--Sobic008G049100 Sobic008G163500--Sobic005G098800 Sobic008G163500--Sobic001G422500 Sobic008G163500--Sobic010G224700 Sobic004G036700 Sobic004G036700 Sobic008G163500--Sobic004G036700 Sobic001G049800--Sobic007G060600 Sobic001G049800--Sobic004G151000 Sobic001G049800--Sobic004G027300 Sobic001G544300 Sobic001G544300 Sobic001G049800--Sobic001G544300 Sobic001G049800--Sobic010G224700 Sobic006G111200 Sobic006G111200 Sobic001G049800--Sobic006G111200 Sobic006G059500 Sobic006G059500 Sobic001G049800--Sobic006G059500 Sobic001G049800--Sobic002G378100 Sobic001G049800--Sobic010G083900 Sobic009G163600 Sobic009G163600 Sobic003G425100--Sobic009G163600 Sobic003G425100--Sobic005G028100 Sobic003G425100--Sobic004G027300 Sobic006G225400 Sobic006G225400 Sobic003G425100--Sobic006G225400 Sobic003G425100--Sobic010G224700 Sobic009G071700 Sobic009G071700 Sobic003G425100--Sobic009G071700 Sobic003G436600 Sobic003G436600 Sobic003G425100--Sobic003G436600 Sobic003G425100--Sobic006G198600 Sobic003G425100--Sobic004G036700 Sobic002G071400 Sobic002G071400 Sobic003G199300--Sobic002G071400 Sobic003G199300--Sobic008G049100 Sobic004G085000 Sobic004G085000 Sobic003G199300--Sobic004G085000 Sobic003G199300--Sobic010G205900 Sobic001G429600 Sobic001G429600 Sobic003G199300--Sobic001G429600 Sobic003G199300--Sobic002G378100 Sobic003G199300--Sobic009G246500 Sobic003G199300--Sobic010G224700 Sobic003G199300--Sobic006G185200
Octagon: transcription factors


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