Gene annotation
Transcriptome id Sobic.004G027300.1
Synonym SUV2, Sb04g002415
Functional annotation expressed protein
UniProt A0A194YMC0
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G45610 : protein dimerizations
RAP-DB (Rice) LOC_Os02g03590.1 : expressed protein
MaizeGDB (Corn) Zm00025a034978
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G027300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G151000 RecF/RecN/SMC N terminal domain containing protein, expressed K10866: DNA repair protein RAD50
2 Sobic.001G049800 DDT domain containing protein, putative, expressed -
3 Sobic.010G224700 - K17680: twinkle protein
4 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
5 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
6 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
7 Sobic.001G453500 expressed protein -
8 Sobic.007G059700 CRS2-associated factor 2, mitochondrial precursor, putative, expressed -
9 Sobic.002G112600 zinc finger family protein, putative, expressed -
10 Sobic.004G027400 - -
11 Sobic.001G368300 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
12 Sobic.001G119600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
13 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
14 Sobic.007G014800 RNA recognition motif containing protein, putative, expressed -
15 Sobic.009G163600 exosome complex exonuclease, putative, expressed K11600: RRP41, EXOSC4, exosome complex component RRP41
16 Sobic.006G128400 PPR repeat containing protein, expressed -
17 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
18 Sobic.006G273900 expressed protein -
19 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
20 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1


Gene co-expression network
sample Sobic004G027300 Sobic004G027300 Sobic004G151000 Sobic004G151000 Sobic004G027300--Sobic004G151000 Sobic001G049800 Sobic001G049800 Sobic004G027300--Sobic001G049800 Sobic010G224700 Sobic010G224700 Sobic004G027300--Sobic010G224700 Sobic007G060600 Sobic007G060600 Sobic004G027300--Sobic007G060600 Sobic002G378100 Sobic002G378100 Sobic004G027300--Sobic002G378100 Sobic003G425100 Sobic003G425100 Sobic004G027300--Sobic003G425100 Sobic001G453500 Sobic001G453500 Sobic004G027300--Sobic001G453500 Sobic007G059700 Sobic007G059700 Sobic004G027300--Sobic007G059700 Sobic002G112600 Sobic002G112600 Sobic004G027300--Sobic002G112600 Sobic004G151000--Sobic001G049800 Sobic004G151000--Sobic004G027300 Sobic006G111200 Sobic006G111200 Sobic004G151000--Sobic006G111200 Sobic004G151000--Sobic002G378100 Sobic004G151000--Sobic007G060600 Sobic004G151000--Sobic002G112600 Sobic004G151000--Sobic001G453500 Sobic006G059500 Sobic006G059500 Sobic004G151000--Sobic006G059500 Sobic004G151000--Sobic007G059700 Sobic001G049800--Sobic007G060600 Sobic001G049800--Sobic004G151000 Sobic001G049800--Sobic004G027300 Sobic001G544300 Sobic001G544300 Sobic001G049800--Sobic001G544300 Sobic001G049800--Sobic010G224700 Sobic001G049800--Sobic006G111200 Sobic001G049800--Sobic006G059500 Sobic001G049800--Sobic002G378100 Sobic010G083900 Sobic010G083900 Sobic001G049800--Sobic010G083900 Sobic010G224700--Sobic002G378100 Sobic008G017100 Sobic008G017100 Sobic010G224700--Sobic008G017100 Sobic010G224700--Sobic004G027300 Sobic001G119600 Sobic001G119600 Sobic010G224700--Sobic001G119600 Sobic003G123200 Sobic003G123200 Sobic010G224700--Sobic003G123200 Sobic008G163500 Sobic008G163500 Sobic010G224700--Sobic008G163500 Sobic010G224700--Sobic001G049800 Sobic010G224700--Sobic003G425100 Sobic003G199300 Sobic003G199300 Sobic010G224700--Sobic003G199300 Sobic007G060600--Sobic001G049800 Sobic001G040600 Sobic001G040600 Sobic007G060600--Sobic001G040600 Sobic007G060600--Sobic007G059700 Sobic007G060600--Sobic004G151000 Sobic007G060600--Sobic004G027300 Sobic006G273900 Sobic006G273900 Sobic007G060600--Sobic006G273900 Sobic009G238700 Sobic009G238700 Sobic007G060600--Sobic009G238700 Sobic007G060600--Sobic006G111200 Sobic009G191500 Sobic009G191500 Sobic007G060600--Sobic009G191500 Sobic006G185200 Sobic006G185200 Sobic002G378100--Sobic006G185200 Sobic006G128400 Sobic006G128400 Sobic002G378100--Sobic006G128400 Sobic002G378100--Sobic004G151000 Sobic002G378100--Sobic010G224700 Sobic002G378100--Sobic010G083900 Sobic002G092050 Sobic002G092050 Sobic002G378100--Sobic002G092050 Sobic002G378100--Sobic004G027300 Sobic001G422500 Sobic001G422500 Sobic002G378100--Sobic001G422500 Sobic009G213200 Sobic009G213200 Sobic002G378100--Sobic009G213200 Sobic009G163600 Sobic009G163600 Sobic003G425100--Sobic009G163600 Sobic005G028100 Sobic005G028100 Sobic003G425100--Sobic005G028100 Sobic003G425100--Sobic004G027300 Sobic006G225400 Sobic006G225400 Sobic003G425100--Sobic006G225400 Sobic003G425100--Sobic010G224700 Sobic009G071700 Sobic009G071700 Sobic003G425100--Sobic009G071700 Sobic003G436600 Sobic003G436600 Sobic003G425100--Sobic003G436600 Sobic006G198600 Sobic006G198600 Sobic003G425100--Sobic006G198600 Sobic004G036700 Sobic004G036700 Sobic003G425100--Sobic004G036700 Sobic001G453500--Sobic006G111200 Sobic001G368300 Sobic001G368300 Sobic001G453500--Sobic001G368300 Sobic001G453500--Sobic004G151000 Sobic006G140400 Sobic006G140400 Sobic001G453500--Sobic006G140400 Sobic004G027400 Sobic004G027400 Sobic001G453500--Sobic004G027400 Sobic001G453500--Sobic004G027300 Sobic001G453500--Sobic001G049800 Sobic001G453500--Sobic002G112600 Sobic009G105400 Sobic009G105400 Sobic001G453500--Sobic009G105400 Sobic007G059700--Sobic006G273900 Sobic007G059700--Sobic007G060600 Sobic007G059700--Sobic004G151000 Sobic007G059700--Sobic001G049800 Sobic007G059700--Sobic004G027300 Sobic007G059700--Sobic009G191500 Sobic007G059700--Sobic001G453500 Sobic010G097500 Sobic010G097500 Sobic007G059700--Sobic010G097500 Sobic007G059700--Sobic006G111200 Sobic002G112600--Sobic004G151000 Sobic004G215900 Sobic004G215900 Sobic002G112600--Sobic004G215900 Sobic002G112600--Sobic010G224700 Sobic007G014800 Sobic007G014800 Sobic002G112600--Sobic007G014800 Sobic005G000300 Sobic005G000300 Sobic002G112600--Sobic005G000300 Sobic002G112600--Sobic004G027400 Sobic002G112600--Sobic009G163600 Sobic002G112600--Sobic001G453500 Sobic002G112600--Sobic004G027300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.