Gene annotation
Transcriptome id Sobic.007G060600.1
Synonym Sb07g004810, POLGAMMA2
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
PolI-like DNA polymerase, putative, expressed
UniProt C6JSS5 , A0A1Z5R875
Pfam PF01612 PF00476
Panther DB PTHR10133 PTHR10133:SF34
NCBI CDD -
KEGG Orthology K02335; DNA polymerase I
Gene Ontology GO:0008408; 3'-5' exonuclease activity GO:0006139nucleobase-containing compound metabolic process GO:0003676nucleic acid binding GO:0006260DNA replication GO:0003887DNA-directed DNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G50840 : polymerase gamma 2
RAP-DB (Rice) LOC_Os08g07840.1 : PolI-like DNA polymerase, putative, expressed
MaizeGDB (Corn) Zm00025a057152 , Zm00025a055000
Brachypodium PNT66682 , PNT66683 , PNT66684 , PNT66685 , PNT66686 , KQJ95183 , KQJ95185 , KQJ95184 , KQJ95187 , KQJ95186 , PNT61954 , KQJ84864 , KQJ84865
Barley HORVU2Hr1G116060.2 , HORVU2Hr1G116060.1 , HORVU2Hr1G116060.6 , HORVU2Hr1G116060.7 , HORVU2Hr1G116060.5
Wheat TraesCS2B02G556100 , TraesCS2B02G556100 , TraesCS2B02G556100 , TraesCS2B02G556100 , TraesCS2B02G556100 , TraesCS2B02G556100 , TraesCS2D02G528800 , TraesCS7B02G184500 , TraesCS7A02G295900 , TraesCS7A02G295900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G049800 DDT domain containing protein, putative, expressed -
2 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A
3 Sobic.007G059700 CRS2-associated factor 2, mitochondrial precursor, putative, expressed -
4 Sobic.004G151000 RecF/RecN/SMC N terminal domain containing protein, expressed K10866: DNA repair protein RAD50
5 Sobic.004G027300 expressed protein -
6 Sobic.006G273900 expressed protein -
7 Sobic.009G238700 EMB2744, putative, expressed -
8 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
9 Sobic.009G191500 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
10 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3
11 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
12 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
13 Sobic.001G544300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed -
14 Sobic.010G099300 - K03501: gidB, 16S rRNA (guanine527-N7)-methyltransferase
15 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
16 Sobic.001G368300 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
17 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
18 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
19 Sobic.001G453500 expressed protein -
20 Sobic.006G059500 expressed protein K13150: COIL, coilin


Gene co-expression network
sample Sobic007G060600 Sobic007G060600 Sobic001G049800 Sobic001G049800 Sobic007G060600--Sobic001G049800 Sobic001G040600 Sobic001G040600 Sobic007G060600--Sobic001G040600 Sobic007G059700 Sobic007G059700 Sobic007G060600--Sobic007G059700 Sobic004G151000 Sobic004G151000 Sobic007G060600--Sobic004G151000 Sobic004G027300 Sobic004G027300 Sobic007G060600--Sobic004G027300 Sobic006G273900 Sobic006G273900 Sobic007G060600--Sobic006G273900 Sobic009G238700 Sobic009G238700 Sobic007G060600--Sobic009G238700 Sobic006G111200 Sobic006G111200 Sobic007G060600--Sobic006G111200 Sobic009G191500 Sobic009G191500 Sobic007G060600--Sobic009G191500 Sobic001G049800--Sobic007G060600 Sobic001G049800--Sobic004G151000 Sobic001G049800--Sobic004G027300 Sobic001G544300 Sobic001G544300 Sobic001G049800--Sobic001G544300 Sobic010G224700 Sobic010G224700 Sobic001G049800--Sobic010G224700 Sobic001G049800--Sobic006G111200 Sobic006G059500 Sobic006G059500 Sobic001G049800--Sobic006G059500 Sobic002G378100 Sobic002G378100 Sobic001G049800--Sobic002G378100 Sobic010G083900 Sobic010G083900 Sobic001G049800--Sobic010G083900 Sobic001G040600--Sobic007G060600 Sobic006G271900 Sobic006G271900 Sobic001G040600--Sobic006G271900 Sobic010G099300 Sobic010G099300 Sobic001G040600--Sobic010G099300 Sobic003G336500 Sobic003G336500 Sobic001G040600--Sobic003G336500 Sobic001G040600--Sobic001G049800 Sobic003G051500 Sobic003G051500 Sobic001G040600--Sobic003G051500 Sobic008G100400 Sobic008G100400 Sobic001G040600--Sobic008G100400 Sobic001G081300 Sobic001G081300 Sobic001G040600--Sobic001G081300 Sobic002G251800 Sobic002G251800 Sobic001G040600--Sobic002G251800 Sobic007G059700--Sobic006G273900 Sobic007G059700--Sobic007G060600 Sobic007G059700--Sobic004G151000 Sobic007G059700--Sobic001G049800 Sobic007G059700--Sobic004G027300 Sobic007G059700--Sobic009G191500 Sobic001G453500 Sobic001G453500 Sobic007G059700--Sobic001G453500 Sobic010G097500 Sobic010G097500 Sobic007G059700--Sobic010G097500 Sobic007G059700--Sobic006G111200 Sobic004G151000--Sobic001G049800 Sobic004G151000--Sobic004G027300 Sobic004G151000--Sobic006G111200 Sobic004G151000--Sobic002G378100 Sobic004G151000--Sobic007G060600 Sobic002G112600 Sobic002G112600 Sobic004G151000--Sobic002G112600 Sobic004G151000--Sobic001G453500 Sobic004G151000--Sobic006G059500 Sobic004G151000--Sobic007G059700 Sobic004G027300--Sobic004G151000 Sobic004G027300--Sobic001G049800 Sobic004G027300--Sobic010G224700 Sobic004G027300--Sobic007G060600 Sobic004G027300--Sobic002G378100 Sobic003G425100 Sobic003G425100 Sobic004G027300--Sobic003G425100 Sobic004G027300--Sobic001G453500 Sobic004G027300--Sobic007G059700 Sobic004G027300--Sobic002G112600 Sobic006G273900--Sobic007G059700 Sobic006G273900--Sobic007G060600 Sobic006G273900--Sobic001G049800 Sobic006G273900--Sobic004G151000 Sobic001G368300 Sobic001G368300 Sobic006G273900--Sobic001G368300 Sobic006G273900--Sobic004G027300 Sobic006G273900--Sobic009G191500 Sobic004G215900 Sobic004G215900 Sobic006G273900--Sobic004G215900 Sobic006G273900--Sobic006G111200 Sobic009G238700--Sobic007G060600 Sobic009G238700--Sobic001G081300 Sobic001G347100 Sobic001G347100 Sobic009G238700--Sobic001G347100 Sobic009G238700--Sobic001G040600 Sobic009G238700--Sobic001G049800 Sobic007G179600 Sobic007G179600 Sobic009G238700--Sobic007G179600 Sobic009G238700--Sobic006G271900 Sobic003G299200 Sobic003G299200 Sobic009G238700--Sobic003G299200 Sobic003G352100 Sobic003G352100 Sobic009G238700--Sobic003G352100 Sobic006G111200--Sobic001G453500 Sobic006G111200--Sobic004G151000 Sobic006G111200--Sobic001G368300 Sobic006G111200--Sobic007G060600 Sobic006G111200--Sobic001G049800 Sobic006G111200--Sobic006G271900 Sobic002G380100 Sobic002G380100 Sobic006G111200--Sobic002G380100 Sobic006G111200--Sobic006G059500 Sobic006G111200--Sobic007G059700 Sobic008G068100 Sobic008G068100 Sobic009G191500--Sobic008G068100 Sobic009G191500--Sobic004G215900 Sobic001G483800 Sobic001G483800 Sobic009G191500--Sobic001G483800 Sobic005G079201 Sobic005G079201 Sobic009G191500--Sobic005G079201 Sobic005G088900 Sobic005G088900 Sobic009G191500--Sobic005G088900 Sobic002G003300 Sobic002G003300 Sobic009G191500--Sobic002G003300 Sobic010G153300 Sobic010G153300 Sobic009G191500--Sobic010G153300 Sobic009G191500--Sobic007G060600 Sobic009G191500--Sobic003G336500
Octagon: transcription factors


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