Gene annotation
Transcriptome id Sobic.009G191500.1
Synonym Sb09g025030
Functional annotation pseudouridylate synthase, putative, expressed
UniProt A0A1B6P9A1
Pfam PF01142
Panther DB PTHR13326 PTHR13326:SF8
NCBI CDD -
KEGG Orthology K06176; truD, tRNA pseudouridine13 synthase
Gene Ontology GO:0009982; pseudouridine synthase activity GO:0009451RNA modification GO:0003723RNA binding GO:0001522pseudouridine synthesis


Orthologs (automatic annotation)
TAIR AT3G04820 : Pseudouridine synthase family protein
RAP-DB (Rice) LOC_Os01g56620.1 : pseudouridylate synthase, putative, expressed
MaizeGDB (Corn) Zm00025a019912 , Zm00025a037905
Brachypodium PNT70946 , KQK05495 , PNT70945
Barley HORVU3Hr1G075620.1 , HORVU3Hr1G075620.3 , HORVU3Hr1G075620.2 , HORVU3Hr1G075620.5 , HORVU3Hr1G075620.4 , HORVU3Hr1G075620.6 , HORVU3Hr1G075620.59 , HORVU3Hr1G075620.51 , HORVU3Hr1G075620.50 , HORVU3Hr1G075620.52 , HORVU3Hr1G075620.55 , HORVU3Hr1G075620.54 , HORVU3Hr1G075620.57 , HORVU3Hr1G075620.56 , HORVU3Hr1G075620.48 , HORVU3Hr1G075620.49 , HORVU3Hr1G075620.46 , HORVU3Hr1G075620.44 , HORVU3Hr1G075620.45 , HORVU3Hr1G075620.42 , HORVU3Hr1G075620.43 , HORVU3Hr1G075620.40 , HORVU3Hr1G075620.41 , HORVU3Hr1G075620.39 , HORVU3Hr1G075620.33 , HORVU3Hr1G075620.32 , HORVU3Hr1G075620.31 , HORVU3Hr1G075620.30 , HORVU3Hr1G075620.37 , HORVU3Hr1G075620.36 , HORVU3Hr1G075620.35 , HORVU3Hr1G075620.34 , HORVU3Hr1G075620.28 , HORVU3Hr1G075620.29 , HORVU3Hr1G075620.20 , HORVU3Hr1G075620.21 , HORVU3Hr1G075620.22 , HORVU3Hr1G075620.23 , HORVU3Hr1G075620.24 , HORVU3Hr1G075620.25 , HORVU3Hr1G075620.26 , HORVU3Hr1G075620.27 , HORVU3Hr1G075620.19 , HORVU3Hr1G075620.15 , HORVU3Hr1G075620.16 , HORVU3Hr1G075620.11 , HORVU3Hr1G075620.10 , HORVU3Hr1G075620.13 , HORVU3Hr1G075620.12
Wheat TraesCS1A02G327000 , TraesCS1D02G329100 , TraesCS3A02G322500 , TraesCS1B02G340400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
2 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
3 Sobic.001G483800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tubulin--tyrosine ligase-like protein 12, putative, expressed K16609: tubulin--tyrosine ligase-like protein 12
4 Sobic.005G079201 - -
5 Sobic.005G088900 AGAP007117-PA, putative, expressed -
6 Sobic.002G003300 - K10884: XRCC6, KU70, ATP-dependent DNA helicase 2 subunit 1
7 Sobic.010G153300 protein phosphatase 2C, putative, expressed K17679: ATP-dependent RNA helicase MSS116, mitochondrial
8 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
9 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
10 Sobic.006G236000 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
11 Sobic.001G372800 nucleolar protein NOP5-1, putative, expressed K14565: nucleolar protein 58
12 Sobic.010G038800 NAP domain containing protein, putative, expressed K11279: NAP1L1, nucleosome assembly protein 1-like 1
13 Sobic.009G176300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
14 Sobic.007G059700 CRS2-associated factor 2, mitochondrial precursor, putative, expressed -
15 Sobic.001G199500 heat shock protein DnaJ, putative, expressed K09531: DnaJ homolog subfamily C member 11
16 Sobic.004G027400 - -
17 Sobic.009G105400 OsFBX135 - F-box domain containing protein, expressed -
18 Sobic.001G024000 expressed protein K14844: pumilio homology domain family member 6
19 Sobic.009G010300 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
20 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2


Gene co-expression network
sample Sobic009G191500 Sobic009G191500 Sobic008G068100 Sobic008G068100 Sobic009G191500--Sobic008G068100 Sobic004G215900 Sobic004G215900 Sobic009G191500--Sobic004G215900 Sobic001G483800 Sobic001G483800 Sobic009G191500--Sobic001G483800 Sobic005G079201 Sobic005G079201 Sobic009G191500--Sobic005G079201 Sobic005G088900 Sobic005G088900 Sobic009G191500--Sobic005G088900 Sobic002G003300 Sobic002G003300 Sobic009G191500--Sobic002G003300 Sobic010G153300 Sobic010G153300 Sobic009G191500--Sobic010G153300 Sobic007G060600 Sobic007G060600 Sobic009G191500--Sobic007G060600 Sobic003G336500 Sobic003G336500 Sobic009G191500--Sobic003G336500 Sobic008G068100--Sobic009G191500 Sobic008G068100--Sobic004G215900 Sobic008G068100--Sobic005G079201 Sobic006G236000 Sobic006G236000 Sobic008G068100--Sobic006G236000 Sobic008G068100--Sobic002G003300 Sobic008G068100--Sobic001G483800 Sobic008G068100--Sobic005G088900 Sobic008G068100--Sobic003G336500 Sobic001G024000 Sobic001G024000 Sobic008G068100--Sobic001G024000 Sobic004G215900--Sobic008G068100 Sobic004G215900--Sobic006G236000 Sobic004G215900--Sobic009G191500 Sobic004G215900--Sobic002G003300 Sobic004G215900--Sobic001G024000 Sobic008G111600 Sobic008G111600 Sobic004G215900--Sobic008G111600 Sobic004G038100 Sobic004G038100 Sobic004G215900--Sobic004G038100 Sobic002G112600 Sobic002G112600 Sobic004G215900--Sobic002G112600 Sobic002G043000 Sobic002G043000 Sobic004G215900--Sobic002G043000 Sobic001G372800 Sobic001G372800 Sobic001G483800--Sobic001G372800 Sobic001G483800--Sobic009G191500 Sobic001G483800--Sobic008G068100 Sobic002G268100 Sobic002G268100 Sobic001G483800--Sobic002G268100 Sobic009G010300 Sobic009G010300 Sobic001G483800--Sobic009G010300 Sobic001G483800--Sobic003G336500 Sobic005G028100 Sobic005G028100 Sobic001G483800--Sobic005G028100 Sobic001G483800--Sobic005G088900 Sobic003G322200 Sobic003G322200 Sobic001G483800--Sobic003G322200 Sobic005G079201--Sobic008G068100 Sobic005G079201--Sobic009G191500 Sobic005G079201--Sobic004G215900 Sobic005G079201--Sobic006G236000 Sobic005G079201--Sobic005G088900 Sobic008G090000 Sobic008G090000 Sobic005G079201--Sobic008G090000 Sobic005G079201--Sobic002G043000 Sobic005G079201--Sobic002G003300 Sobic001G408300 Sobic001G408300 Sobic005G079201--Sobic001G408300 Sobic001G199500 Sobic001G199500 Sobic005G088900--Sobic001G199500 Sobic005G088900--Sobic009G191500 Sobic009G176300 Sobic009G176300 Sobic005G088900--Sobic009G176300 Sobic005G088900--Sobic004G215900 Sobic005G088900--Sobic008G068100 Sobic003G432300 Sobic003G432300 Sobic005G088900--Sobic003G432300 Sobic003G144000 Sobic003G144000 Sobic005G088900--Sobic003G144000 Sobic002G133000 Sobic002G133000 Sobic005G088900--Sobic002G133000 Sobic005G088900--Sobic002G003300 Sobic002G003300--Sobic004G215900 Sobic002G003300--Sobic009G191500 Sobic002G003300--Sobic008G068100 Sobic002G003300--Sobic008G111600 Sobic002G003300--Sobic005G088900 Sobic002G003300--Sobic006G236000 Sobic002G003300--Sobic002G043000 Sobic002G003300--Sobic001G024000 Sobic006G181800 Sobic006G181800 Sobic002G003300--Sobic006G181800 Sobic010G153300--Sobic009G191500 Sobic010G153300--Sobic004G215900 Sobic010G097500 Sobic010G097500 Sobic010G153300--Sobic010G097500 Sobic010G038800 Sobic010G038800 Sobic010G153300--Sobic010G038800 Sobic010G153300--Sobic002G043000 Sobic007G059700 Sobic007G059700 Sobic010G153300--Sobic007G059700 Sobic010G153300--Sobic008G068100 Sobic005G098000 Sobic005G098000 Sobic010G153300--Sobic005G098000 Sobic006G206200 Sobic006G206200 Sobic010G153300--Sobic006G206200 Sobic001G049800 Sobic001G049800 Sobic007G060600--Sobic001G049800 Sobic001G040600 Sobic001G040600 Sobic007G060600--Sobic001G040600 Sobic007G060600--Sobic007G059700 Sobic004G151000 Sobic004G151000 Sobic007G060600--Sobic004G151000 Sobic004G027300 Sobic004G027300 Sobic007G060600--Sobic004G027300 Sobic006G273900 Sobic006G273900 Sobic007G060600--Sobic006G273900 Sobic009G238700 Sobic009G238700 Sobic007G060600--Sobic009G238700 Sobic006G111200 Sobic006G111200 Sobic007G060600--Sobic006G111200 Sobic007G060600--Sobic009G191500 Sobic003G336500--Sobic008G068100 Sobic003G336500--Sobic001G040600 Sobic003G336500--Sobic009G191500 Sobic003G336500--Sobic007G060600 Sobic003G336500--Sobic001G199500 Sobic003G336500--Sobic001G483800 Sobic003G336500--Sobic005G088900 Sobic003G336500--Sobic009G176300 Sobic008G100400 Sobic008G100400 Sobic003G336500--Sobic008G100400
Octagon: transcription factors


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