Gene annotation
Transcriptome id Sobic.009G010300.1
Synonym Sb09g001090, PUM1, APUM1
Functional annotation pumilio-family RNA binding protein, putative, expressed
UniProt C5YYF9
Pfam PF00806 PF07990
Panther DB PTHR12537 PTHR12537:SF65
NCBI CDD -
KEGG Orthology K17943; pumilio RNA-binding family
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT2G29200 : pumilio 1
RAP-DB (Rice) LOC_Os05g01910.1 : pumilio-family RNA binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a040956 , Zm00025a038275
Brachypodium KQK08049 , PNT72103
Barley HORVU6Hr1G091310.6 , HORVU6Hr1G091310.7 , HORVU6Hr1G091310.4 , HORVU6Hr1G091310.5 , HORVU6Hr1G091310.2 , HORVU6Hr1G091310.3 , HORVU6Hr1G091310.1 , HORVU3Hr1G115020.2 , HORVU3Hr1G115020.3 , HORVU3Hr1G115020.1 , HORVU3Hr1G115020.6 , HORVU3Hr1G115020.7 , HORVU3Hr1G115020.4 , HORVU3Hr1G115020.5 , HORVU3Hr1G115020.8 , HORVU3Hr1G115020.9 , HORVU3Hr1G115020.10 , HORVU3Hr1G115020.11 , HORVU1Hr1G004200.18 , HORVU1Hr1G004200.15 , HORVU1Hr1G004200.14 , HORVU1Hr1G004200.17 , HORVU1Hr1G004200.16 , HORVU1Hr1G004200.11 , HORVU1Hr1G004200.10 , HORVU1Hr1G004200.13 , HORVU1Hr1G004200.12 , HORVU1Hr1G004200.9 , HORVU1Hr1G004200.8 , HORVU1Hr1G004200.1 , HORVU1Hr1G004200.3 , HORVU1Hr1G004200.2 , HORVU1Hr1G004200.5 , HORVU1Hr1G004200.4 , HORVU1Hr1G004200.7 , HORVU1Hr1G004200.6
Wheat TraesCS6D02G379800 , TraesCS5D02G282300 , TraesCS3A02G526800 , TraesCS1A02G029200 , TraesCS1B02G036400 , TraesCS3D02G532100 , TraesCS3B02G594500 , TraesCS5B02G274400 , TraesCS5A02G274700 , TraesCS1D02G029400 , TraesCS3B02G594500
Populus -


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cDNA sequences
Sobic.009G010300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G268100 - K16911: ATP-dependent RNA helicase DDX21
2 Sobic.001G483800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tubulin--tyrosine ligase-like protein 12, putative, expressed K16609: tubulin--tyrosine ligase-like protein 12
3 Sobic.001G372800 nucleolar protein NOP5-1, putative, expressed K14565: nucleolar protein 58
4 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
5 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
6 Sobic.001G408300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.010G065800 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
8 Sobic.008G090000 oxysterol-binding protein, putative, expressed -
9 Sobic.009G191500 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
10 Sobic.005G079201 - -
11 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -
12 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
13 Sobic.010G038800 NAP domain containing protein, putative, expressed K11279: NAP1L1, nucleosome assembly protein 1-like 1
14 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
15 Sobic.006G208400 expressed protein K14318: nuclear pore complex protein Nup88
16 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
17 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
18 Sobic.002G127400 glycosyl hydrolase family 10 protein, putative, expressed -
19 Sobic.006G236000 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
20 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)


Gene co-expression network
sample Sobic009G010300 Sobic009G010300 Sobic002G268100 Sobic002G268100 Sobic009G010300--Sobic002G268100 Sobic001G483800 Sobic001G483800 Sobic009G010300--Sobic001G483800 Sobic001G372800 Sobic001G372800 Sobic009G010300--Sobic001G372800 Sobic008G068100 Sobic008G068100 Sobic009G010300--Sobic008G068100 Sobic003G123200 Sobic003G123200 Sobic009G010300--Sobic003G123200 Sobic001G408300 Sobic001G408300 Sobic009G010300--Sobic001G408300 Sobic010G065800 Sobic010G065800 Sobic009G010300--Sobic010G065800 Sobic008G090000 Sobic008G090000 Sobic009G010300--Sobic008G090000 Sobic009G191500 Sobic009G191500 Sobic009G010300--Sobic009G191500 Sobic002G268100--Sobic009G010300 Sobic002G268100--Sobic001G372800 Sobic002G268100--Sobic001G483800 Sobic004G082700 Sobic004G082700 Sobic002G268100--Sobic004G082700 Sobic010G038800 Sobic010G038800 Sobic002G268100--Sobic010G038800 Sobic003G322200 Sobic003G322200 Sobic002G268100--Sobic003G322200 Sobic002G268100--Sobic003G123200 Sobic010G252700 Sobic010G252700 Sobic002G268100--Sobic010G252700 Sobic002G362200 Sobic002G362200 Sobic002G268100--Sobic002G362200 Sobic001G483800--Sobic001G372800 Sobic001G483800--Sobic009G191500 Sobic001G483800--Sobic008G068100 Sobic001G483800--Sobic002G268100 Sobic001G483800--Sobic009G010300 Sobic003G336500 Sobic003G336500 Sobic001G483800--Sobic003G336500 Sobic005G028100 Sobic005G028100 Sobic001G483800--Sobic005G028100 Sobic005G088900 Sobic005G088900 Sobic001G483800--Sobic005G088900 Sobic001G483800--Sobic003G322200 Sobic001G372800--Sobic001G483800 Sobic001G372800--Sobic002G268100 Sobic001G372800--Sobic003G322200 Sobic001G372800--Sobic009G010300 Sobic001G372800--Sobic009G191500 Sobic001G401400 Sobic001G401400 Sobic001G372800--Sobic001G401400 Sobic001G372800--Sobic010G038800 Sobic001G372800--Sobic005G028100 Sobic003G432300 Sobic003G432300 Sobic001G372800--Sobic003G432300 Sobic008G068100--Sobic009G191500 Sobic004G215900 Sobic004G215900 Sobic008G068100--Sobic004G215900 Sobic005G079201 Sobic005G079201 Sobic008G068100--Sobic005G079201 Sobic006G236000 Sobic006G236000 Sobic008G068100--Sobic006G236000 Sobic002G003300 Sobic002G003300 Sobic008G068100--Sobic002G003300 Sobic008G068100--Sobic001G483800 Sobic008G068100--Sobic005G088900 Sobic008G068100--Sobic003G336500 Sobic001G024000 Sobic001G024000 Sobic008G068100--Sobic001G024000 Sobic005G098800 Sobic005G098800 Sobic003G123200--Sobic005G098800 Sobic008G163500 Sobic008G163500 Sobic003G123200--Sobic008G163500 Sobic010G205900 Sobic010G205900 Sobic003G123200--Sobic010G205900 Sobic009G246500 Sobic009G246500 Sobic003G123200--Sobic009G246500 Sobic008G049100 Sobic008G049100 Sobic003G123200--Sobic008G049100 Sobic003G123200--Sobic005G028100 Sobic002G423400 Sobic002G423400 Sobic003G123200--Sobic002G423400 Sobic006G198600 Sobic006G198600 Sobic003G123200--Sobic006G198600 Sobic010G224700 Sobic010G224700 Sobic003G123200--Sobic010G224700 Sobic007G006800 Sobic007G006800 Sobic001G408300--Sobic007G006800 Sobic010G250800 Sobic010G250800 Sobic001G408300--Sobic010G250800 Sobic001G408300--Sobic010G065800 Sobic001G408300--Sobic010G038800 Sobic001G061800 Sobic001G061800 Sobic001G408300--Sobic001G061800 Sobic006G208400 Sobic006G208400 Sobic001G408300--Sobic006G208400 Sobic001G408300--Sobic005G088900 Sobic001G408300--Sobic009G010300 Sobic001G408300--Sobic010G252700 Sobic008G136100 Sobic008G136100 Sobic010G065800--Sobic008G136100 Sobic010G065800--Sobic001G408300 Sobic006G067700 Sobic006G067700 Sobic010G065800--Sobic006G067700 Sobic001G143600 Sobic001G143600 Sobic010G065800--Sobic001G143600 Sobic010G065800--Sobic009G010300 Sobic002G219900 Sobic002G219900 Sobic010G065800--Sobic002G219900 Sobic001G385400 Sobic001G385400 Sobic010G065800--Sobic001G385400 Sobic006G056000 Sobic006G056000 Sobic010G065800--Sobic006G056000 Sobic009G148200 Sobic009G148200 Sobic010G065800--Sobic009G148200 Sobic006G275500 Sobic006G275500 Sobic008G090000--Sobic006G275500 Sobic003G147500 Sobic003G147500 Sobic008G090000--Sobic003G147500 Sobic006G084300 Sobic006G084300 Sobic008G090000--Sobic006G084300 Sobic006G016700 Sobic006G016700 Sobic008G090000--Sobic006G016700 Sobic008G083500 Sobic008G083500 Sobic008G090000--Sobic008G083500 Sobic009G146250 Sobic009G146250 Sobic008G090000--Sobic009G146250 Sobic002G168000 Sobic002G168000 Sobic008G090000--Sobic002G168000 Sobic009G188900 Sobic009G188900 Sobic008G090000--Sobic009G188900 Sobic008G090000--Sobic002G362200 Sobic009G191500--Sobic008G068100 Sobic009G191500--Sobic004G215900 Sobic009G191500--Sobic001G483800 Sobic009G191500--Sobic005G079201 Sobic009G191500--Sobic005G088900 Sobic009G191500--Sobic002G003300 Sobic010G153300 Sobic010G153300 Sobic009G191500--Sobic010G153300 Sobic007G060600 Sobic007G060600 Sobic009G191500--Sobic007G060600 Sobic009G191500--Sobic003G336500
Octagon: transcription factors


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