Gene annotation
Transcriptome id Sobic.010G065800.1
Synonym Sb10g005680, UBP23
Functional annotation ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
UniProt C5Z5I7
Pfam PF13423
Panther DB PTHR24006
NCBI CDD KOG1871; Ubiquitin-specific protease KOG1873Ubiquitin-specific protease KOG1870Ubiquitin C-terminal hydrolase
KEGG Orthology K11855; ubiquitin carboxyl-terminal hydrolase 36/42
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G57990 : ubiquitin-specific protease 23
RAP-DB (Rice) LOC_Os06g08530.1 : ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a049777
Brachypodium KQK01138 , KQK01139 , PNT69338 , KQK19270 , KQK19271
Barley HORVU7Hr1G030300.4 , HORVU7Hr1G030300.5 , HORVU7Hr1G030300.7 , HORVU7Hr1G030300.6 , HORVU7Hr1G030300.1 , HORVU7Hr1G030300.2
Wheat TraesCS7D02G149800 , TraesCS7B02G051400 , TraesCS7A02G147900 , TraesCS7A02G147900
Populus -


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cDNA sequences
Sobic.010G065800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G136100 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
2 Sobic.001G408300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.006G067700 "protein kinase (like ACGVIII kinase called KIPK, a KCBP-interacting protein kinase)"(PubMedID : 28676627)@AGC_PVPK_like_kin82y.19 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
4 Sobic.001G143600 pattern formation protein EMB30, putative, expressed K18443: golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
5 Sobic.009G010300 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
6 Sobic.002G219900 Spc97 / Spc98 family protein, putative, expressed K16570: TUBGCP3, gamma-tubulin complex component 3
7 Sobic.001G385400 guanine nucleotide exchange factor, putative, expressed -
8 Sobic.006G056000 OsFBL16 - F-box domain and LRR containing protein, expressed -
9 Sobic.009G148200 deoxynucleoside kinase family, putative, expressed -
10 Sobic.002G098500 H-BTB6 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
11 Sobic.007G142900 receptor-like kinase, putative, expressed -
12 Sobic.010G050700 protein kinase, putative, expressed -
13 Sobic.006G208400 expressed protein K14318: nuclear pore complex protein Nup88
14 Sobic.008G001300 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed -
15 Sobic.002G002100 expressed protein -
16 Sobic.002G143200 kinesin motor domain containing protein, putative, expressed K10395: kinesin family member 4
17 Sobic.008G088842 - -
18 Sobic.006G280100 SET domain containing protein, expressed -
19 Sobic.001G315400 expressed protein -
20 Sobic.002G130900 zinc finger family protein, putative, expressed K18932: palmitoyltransferase


Gene co-expression network
sample Sobic010G065800 Sobic010G065800 Sobic008G136100 Sobic008G136100 Sobic010G065800--Sobic008G136100 Sobic001G408300 Sobic001G408300 Sobic010G065800--Sobic001G408300 Sobic006G067700 Sobic006G067700 Sobic010G065800--Sobic006G067700 Sobic001G143600 Sobic001G143600 Sobic010G065800--Sobic001G143600 Sobic009G010300 Sobic009G010300 Sobic010G065800--Sobic009G010300 Sobic002G219900 Sobic002G219900 Sobic010G065800--Sobic002G219900 Sobic001G385400 Sobic001G385400 Sobic010G065800--Sobic001G385400 Sobic006G056000 Sobic006G056000 Sobic010G065800--Sobic006G056000 Sobic009G148200 Sobic009G148200 Sobic010G065800--Sobic009G148200 Sobic008G136100--Sobic010G065800 Sobic007G142900 Sobic007G142900 Sobic008G136100--Sobic007G142900 Sobic008G136100--Sobic006G067700 Sobic004G168600 Sobic004G168600 Sobic008G136100--Sobic004G168600 Sobic006G262100 Sobic006G262100 Sobic008G136100--Sobic006G262100 Sobic009G259500 Sobic009G259500 Sobic008G136100--Sobic009G259500 Sobic008G042200 Sobic008G042200 Sobic008G136100--Sobic008G042200 Sobic006G110850 Sobic006G110850 Sobic008G136100--Sobic006G110850 Sobic002G098500 Sobic002G098500 Sobic008G136100--Sobic002G098500 Sobic007G006800 Sobic007G006800 Sobic001G408300--Sobic007G006800 Sobic010G250800 Sobic010G250800 Sobic001G408300--Sobic010G250800 Sobic001G408300--Sobic010G065800 Sobic010G038800 Sobic010G038800 Sobic001G408300--Sobic010G038800 Sobic001G061800 Sobic001G061800 Sobic001G408300--Sobic001G061800 Sobic006G208400 Sobic006G208400 Sobic001G408300--Sobic006G208400 Sobic005G088900 Sobic005G088900 Sobic001G408300--Sobic005G088900 Sobic001G408300--Sobic009G010300 Sobic010G252700 Sobic010G252700 Sobic001G408300--Sobic010G252700 Sobic003G104100 Sobic003G104100 Sobic006G067700--Sobic003G104100 Sobic006G067700--Sobic009G148200 Sobic001G395200 Sobic001G395200 Sobic006G067700--Sobic001G395200 Sobic006G067700--Sobic010G065800 Sobic001G217100 Sobic001G217100 Sobic006G067700--Sobic001G217100 Sobic003G323300 Sobic003G323300 Sobic006G067700--Sobic003G323300 Sobic006G067700--Sobic002G098500 Sobic006G067700--Sobic006G262100 Sobic006G067700--Sobic008G136100 Sobic001G143600--Sobic001G385400 Sobic009G049200 Sobic009G049200 Sobic001G143600--Sobic009G049200 Sobic001G143600--Sobic002G219900 Sobic003G250900 Sobic003G250900 Sobic001G143600--Sobic003G250900 Sobic003G435500 Sobic003G435500 Sobic001G143600--Sobic003G435500 Sobic006G242500 Sobic006G242500 Sobic001G143600--Sobic006G242500 Sobic001G143600--Sobic010G065800 Sobic006G236000 Sobic006G236000 Sobic001G143600--Sobic006G236000 Sobic001G507200 Sobic001G507200 Sobic001G143600--Sobic001G507200 Sobic002G268100 Sobic002G268100 Sobic009G010300--Sobic002G268100 Sobic001G483800 Sobic001G483800 Sobic009G010300--Sobic001G483800 Sobic001G372800 Sobic001G372800 Sobic009G010300--Sobic001G372800 Sobic008G068100 Sobic008G068100 Sobic009G010300--Sobic008G068100 Sobic003G123200 Sobic003G123200 Sobic009G010300--Sobic003G123200 Sobic009G010300--Sobic001G408300 Sobic009G010300--Sobic010G065800 Sobic008G090000 Sobic008G090000 Sobic009G010300--Sobic008G090000 Sobic009G191500 Sobic009G191500 Sobic009G010300--Sobic009G191500 Sobic002G430900 Sobic002G430900 Sobic002G219900--Sobic002G430900 Sobic010G149600 Sobic010G149600 Sobic002G219900--Sobic010G149600 Sobic007G125700 Sobic007G125700 Sobic002G219900--Sobic007G125700 Sobic002G219900--Sobic001G395200 Sobic006G280100 Sobic006G280100 Sobic002G219900--Sobic006G280100 Sobic003G361400 Sobic003G361400 Sobic002G219900--Sobic003G361400 Sobic002G219900--Sobic001G143600 Sobic003G274400 Sobic003G274400 Sobic002G219900--Sobic003G274400 Sobic003G027800 Sobic003G027800 Sobic002G219900--Sobic003G027800 Sobic001G385400--Sobic001G143600 Sobic002G143200 Sobic002G143200 Sobic001G385400--Sobic002G143200 Sobic001G385400--Sobic003G435500 Sobic008G015200 Sobic008G015200 Sobic001G385400--Sobic008G015200 Sobic001G385400--Sobic010G250800 Sobic001G385400--Sobic001G507200 Sobic002G002100 Sobic002G002100 Sobic001G385400--Sobic002G002100 Sobic009G167100 Sobic009G167100 Sobic001G385400--Sobic009G167100 Sobic006G140600 Sobic006G140600 Sobic001G385400--Sobic006G140600 Sobic003G353600 Sobic003G353600 Sobic006G056000--Sobic003G353600 Sobic002G076000 Sobic002G076000 Sobic006G056000--Sobic002G076000 Sobic005G084100 Sobic005G084100 Sobic006G056000--Sobic005G084100 Sobic004G111000 Sobic004G111000 Sobic006G056000--Sobic004G111000 Sobic002G079100 Sobic002G079100 Sobic006G056000--Sobic002G079100 Sobic001G138400 Sobic001G138400 Sobic006G056000--Sobic001G138400 Sobic004G285000 Sobic004G285000 Sobic006G056000--Sobic004G285000 Sobic006G047100 Sobic006G047100 Sobic006G056000--Sobic006G047100 Sobic006G210000 Sobic006G210000 Sobic006G056000--Sobic006G210000 Sobic009G148200--Sobic006G067700 Sobic009G148200--Sobic003G104100 Sobic010G050700 Sobic010G050700 Sobic009G148200--Sobic010G050700 Sobic004G199200 Sobic004G199200 Sobic009G148200--Sobic004G199200 Sobic010G277200 Sobic010G277200 Sobic009G148200--Sobic010G277200 Sobic001G453500 Sobic001G453500 Sobic009G148200--Sobic001G453500 Sobic002G216600 Sobic002G216600 Sobic009G148200--Sobic002G216600 Sobic009G066400 Sobic009G066400 Sobic009G148200--Sobic009G066400 Sobic001G368300 Sobic001G368300 Sobic009G148200--Sobic001G368300
Octagon: transcription factors


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