Gene annotation
Transcriptome id Sobic.008G001300.1,Sobic.008G001300.2
Synonym
Functional annotation senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed
UniProt A0A1B6PAF0 , A0A1B6PAI6
Pfam PF12799 PF07714 PF12819
Panther DB PTHR27003 PTHR27003:SF23
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT2G37050 : Leucine-rich repeat protein kinase family protein
RAP-DB (Rice) LOC_Os12g01200.3 : senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a033260
Brachypodium KQJ92683
Barley HORVU5Hr1G048950.9 , HORVU5Hr1G048950.8 , HORVU5Hr1G048950.5 , HORVU5Hr1G048950.4 , HORVU5Hr1G048950.7 , HORVU5Hr1G048950.6 , HORVU5Hr1G048950.1 , HORVU5Hr1G048950.3 , HORVU5Hr1G048950.2 , HORVU5Hr1G048950.11 , HORVU5Hr1G048950.10 , HORVU5Hr1G048950.13 , HORVU5Hr1G048950.12 , HORVU5Hr1G048950.15 , HORVU5Hr1G048950.14
Wheat TraesCS5B02G154600 , TraesCS5B02G154600 , TraesCS5B02G154600 , TraesCS5A02G156400 , TraesCS5A02G156400 , TraesCS5D02G161800 , TraesCS5D02G161800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G216600 "DEP1(Ortholog in rice:Huang et al., 2009(PubMedID : 31659854)@keratin-associated protein 5-4, putative, expressed -
2 Sobic.005G204100 kelch repeat protein, putative, expressed -
3 Sobic.004G144100 - -
4 Sobic.010G050700 protein kinase, putative, expressed -
5 Sobic.009G259500 receptor protein kinase CLAVATA1 precursor, putative, expressed -
6 Sobic.007G142900 receptor-like kinase, putative, expressed -
7 Sobic.002G002100 expressed protein -
8 Sobic.009G141700 expressed protein -
9 Sobic.010G065800 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
10 Sobic.006G262100 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed -
11 Sobic.001G385400 guanine nucleotide exchange factor, putative, expressed -
12 Sobic.001G367100 pleckstrin homology domain-containing protein, putative, expressed -
13 Sobic.009G148200 deoxynucleoside kinase family, putative, expressed -
14 Sobic.001G494100 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
15 Sobic.002G098500 H-BTB6 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
16 Sobic.002G143200 kinesin motor domain containing protein, putative, expressed K10395: kinesin family member 4
17 Sobic.008G136100 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
18 Sobic.004G199700 expressed protein -
19 Sobic.003G023400 SCAR-like protein 2, putative, expressed -
20 Sobic.001G384700 RNA-binding zinc finger protein, putative, expressed -


Gene co-expression network
sample Sobic008G001300 Sobic008G001300 Sobic002G216600 Sobic002G216600 Sobic008G001300--Sobic002G216600 Sobic005G204100 Sobic005G204100 Sobic008G001300--Sobic005G204100 Sobic004G144100 Sobic004G144100 Sobic008G001300--Sobic004G144100 Sobic010G050700 Sobic010G050700 Sobic008G001300--Sobic010G050700 Sobic009G259500 Sobic009G259500 Sobic008G001300--Sobic009G259500 Sobic007G142900 Sobic007G142900 Sobic008G001300--Sobic007G142900 Sobic002G002100 Sobic002G002100 Sobic008G001300--Sobic002G002100 Sobic009G141700 Sobic009G141700 Sobic008G001300--Sobic009G141700 Sobic010G065800 Sobic010G065800 Sobic008G001300--Sobic010G065800 Sobic002G216600--Sobic005G204100 Sobic001G384700 Sobic001G384700 Sobic002G216600--Sobic001G384700 Sobic002G216600--Sobic004G144100 Sobic002G216600--Sobic009G259500 Sobic004G199700 Sobic004G199700 Sobic002G216600--Sobic004G199700 Sobic001G079900 Sobic001G079900 Sobic002G216600--Sobic001G079900 Sobic002G216600--Sobic009G141700 Sobic003G174900 Sobic003G174900 Sobic002G216600--Sobic003G174900 Sobic002G348700 Sobic002G348700 Sobic002G216600--Sobic002G348700 Sobic005G204100--Sobic002G216600 Sobic005G204100--Sobic009G259500 Sobic002G072700 Sobic002G072700 Sobic005G204100--Sobic002G072700 Sobic005G204100--Sobic007G142900 Sobic002G098500 Sobic002G098500 Sobic005G204100--Sobic002G098500 Sobic001G221900 Sobic001G221900 Sobic005G204100--Sobic001G221900 Sobic005G204100--Sobic001G384700 Sobic006G272500 Sobic006G272500 Sobic005G204100--Sobic006G272500 Sobic007G189400 Sobic007G189400 Sobic005G204100--Sobic007G189400 Sobic004G144100--Sobic002G216600 Sobic009G200000 Sobic009G200000 Sobic004G144100--Sobic009G200000 Sobic006G262100 Sobic006G262100 Sobic004G144100--Sobic006G262100 Sobic001G395200 Sobic001G395200 Sobic004G144100--Sobic001G395200 Sobic008G048966 Sobic008G048966 Sobic004G144100--Sobic008G048966 Sobic006G201600 Sobic006G201600 Sobic004G144100--Sobic006G201600 Sobic004G144100--Sobic008G001300 Sobic004G144100--Sobic007G142900 Sobic004G144100--Sobic002G002100 Sobic006G056000 Sobic006G056000 Sobic010G050700--Sobic006G056000 Sobic009G148200 Sobic009G148200 Sobic010G050700--Sobic009G148200 Sobic002G380100 Sobic002G380100 Sobic010G050700--Sobic002G380100 Sobic006G067700 Sobic006G067700 Sobic010G050700--Sobic006G067700 Sobic001G367100 Sobic001G367100 Sobic010G050700--Sobic001G367100 Sobic002G010800 Sobic002G010800 Sobic010G050700--Sobic002G010800 Sobic002G192500 Sobic002G192500 Sobic010G050700--Sobic002G192500 Sobic004G227500 Sobic004G227500 Sobic010G050700--Sobic004G227500 Sobic002G334600 Sobic002G334600 Sobic010G050700--Sobic002G334600 Sobic009G259500--Sobic005G204100 Sobic009G259500--Sobic002G216600 Sobic004G154600 Sobic004G154600 Sobic009G259500--Sobic004G154600 Sobic009G259500--Sobic002G072700 Sobic009G259500--Sobic004G199700 Sobic009G259500--Sobic007G142900 Sobic001G258100 Sobic001G258100 Sobic009G259500--Sobic001G258100 Sobic009G259500--Sobic003G174900 Sobic003G300200 Sobic003G300200 Sobic009G259500--Sobic003G300200 Sobic007G142900--Sobic002G072700 Sobic007G142900--Sobic005G204100 Sobic007G142900--Sobic009G259500 Sobic007G142900--Sobic007G189400 Sobic007G142900--Sobic002G216600 Sobic004G168600 Sobic004G168600 Sobic007G142900--Sobic004G168600 Sobic008G136100 Sobic008G136100 Sobic007G142900--Sobic008G136100 Sobic010G180800 Sobic010G180800 Sobic007G142900--Sobic010G180800 Sobic007G142900--Sobic006G201600 Sobic001G113800 Sobic001G113800 Sobic002G002100--Sobic001G113800 Sobic001G385400 Sobic001G385400 Sobic002G002100--Sobic001G385400 Sobic002G002100--Sobic005G204100 Sobic001G315400 Sobic001G315400 Sobic002G002100--Sobic001G315400 Sobic007G210900 Sobic007G210900 Sobic002G002100--Sobic007G210900 Sobic002G002100--Sobic002G098500 Sobic002G002100--Sobic002G216600 Sobic006G167300 Sobic006G167300 Sobic002G002100--Sobic006G167300 Sobic002G002100--Sobic001G367100 Sobic009G141700--Sobic001G079900 Sobic009G141700--Sobic001G384700 Sobic009G141700--Sobic002G216600 Sobic008G169400 Sobic008G169400 Sobic009G141700--Sobic008G169400 Sobic003G323300 Sobic003G323300 Sobic009G141700--Sobic003G323300 Sobic006G046600 Sobic006G046600 Sobic009G141700--Sobic006G046600 Sobic005G062600 Sobic005G062600 Sobic009G141700--Sobic005G062600 Sobic009G141700--Sobic006G067700 Sobic006G022400 Sobic006G022400 Sobic009G141700--Sobic006G022400 Sobic010G065800--Sobic008G136100 Sobic001G408300 Sobic001G408300 Sobic010G065800--Sobic001G408300 Sobic010G065800--Sobic006G067700 Sobic001G143600 Sobic001G143600 Sobic010G065800--Sobic001G143600 Sobic009G010300 Sobic009G010300 Sobic010G065800--Sobic009G010300 Sobic002G219900 Sobic002G219900 Sobic010G065800--Sobic002G219900 Sobic010G065800--Sobic001G385400 Sobic010G065800--Sobic006G056000 Sobic010G065800--Sobic009G148200
Octagon: transcription factors


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