Gene annotation
Transcriptome id Sobic.001G494100.1,Sobic.001G494100.2
Synonym CHR35, DRD1, DMS1, Sb01g046180
Functional annotation expressed protein
UniProt C5WWU8 , A0A1Z5SB70
Pfam PF00271 PF00176
Panther DB PTHR10799 PTHR10799:SF611
NCBI CDD KOG0390; DNA repair protein, SNF2 family
KEGG Orthology K10875; RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT2G16390 : SNF2 domain-containing protein / helicase domain-containing protein
RAP-DB (Rice) LOC_Os03g06920.1 : DRD1, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK23473 , KQK23476 , KQK23475 , KQK23474 , PNT78123 , PNT78124 , PNT78125
Barley HORVU4Hr1G074230.18 , HORVU4Hr1G074230.14 , HORVU4Hr1G074230.15 , HORVU4Hr1G074230.16 , HORVU4Hr1G074230.17 , HORVU4Hr1G074230.10 , HORVU4Hr1G074230.11 , HORVU4Hr1G074230.12 , HORVU4Hr1G074230.13 , HORVU4Hr1G074230.6 , HORVU4Hr1G074230.7 , HORVU4Hr1G074230.4 , HORVU4Hr1G074230.5 , HORVU4Hr1G074230.2 , HORVU4Hr1G074230.3 , HORVU4Hr1G074230.8 , HORVU4Hr1G074230.9 , HORVU4Hr1G074230.1
Wheat TraesCS4D02G279200 , TraesCS4A02G022800 , TraesCS4B02G280600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G046600 expressed protein -
2 Sobic.008G169400 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin response factor, putative, expressed -
3 Sobic.005G204100 kelch repeat protein, putative, expressed -
4 Sobic.004G227500 WD-40 repeat family protein, putative, expressed -
5 Sobic.003G277900 "D61(Ortholog in rice:Morinaka et al., 2006(PubMedID : 31659871)@systemin receptor SR160 precursor, putative, expressed K13415: protein brassinosteroid insensitive 1
6 Sobic.006G262100 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed -
7 Sobic.002G216600 "DEP1(Ortholog in rice:Huang et al., 2009(PubMedID : 31659854)@keratin-associated protein 5-4, putative, expressed -
8 Sobic.004G199700 expressed protein -
9 Sobic.001G315400 expressed protein -
10 Sobic.008G000800 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
11 Sobic.003G027800 protein kinase family protein, putative, expressed -
12 Sobic.002G293700 ATXR, putative, expressed -
13 Sobic.001G113800 receptor protein kinase TMK1 precursor, putative, expressed -
14 Sobic.001G448100 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
15 Sobic.006G022400 F-box/RNI-like/FBD-like domains-containing protein("PubMedID : 26759170,PubMedID : 24597475")@OsFBD9 - F-box and FBD domain containing protein, expressed -
16 Sobic.004G053300 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
17 Sobic.003G375000 RNA recognition motif containing protein, putative, expressed -
18 Sobic.004G135500 - -
19 Sobic.002G002100 expressed protein -
20 Sobic.009G141700 expressed protein -


Gene co-expression network
sample Sobic001G494100 Sobic001G494100 Sobic006G046600 Sobic006G046600 Sobic001G494100--Sobic006G046600 Sobic008G169400 Sobic008G169400 Sobic001G494100--Sobic008G169400 Sobic005G204100 Sobic005G204100 Sobic001G494100--Sobic005G204100 Sobic004G227500 Sobic004G227500 Sobic001G494100--Sobic004G227500 Sobic003G277900 Sobic003G277900 Sobic001G494100--Sobic003G277900 Sobic006G262100 Sobic006G262100 Sobic001G494100--Sobic006G262100 Sobic002G216600 Sobic002G216600 Sobic001G494100--Sobic002G216600 Sobic004G199700 Sobic004G199700 Sobic001G494100--Sobic004G199700 Sobic001G315400 Sobic001G315400 Sobic001G494100--Sobic001G315400 Sobic006G046600--Sobic001G494100 Sobic001G384700 Sobic001G384700 Sobic006G046600--Sobic001G384700 Sobic009G141700 Sobic009G141700 Sobic006G046600--Sobic009G141700 Sobic010G173700 Sobic010G173700 Sobic006G046600--Sobic010G173700 Sobic006G046600--Sobic002G216600 Sobic006G046600--Sobic008G169400 Sobic001G079900 Sobic001G079900 Sobic006G046600--Sobic001G079900 Sobic008G044600 Sobic008G044600 Sobic006G046600--Sobic008G044600 Sobic006G046600--Sobic003G277900 Sobic008G169400--Sobic001G079900 Sobic003G153900 Sobic003G153900 Sobic008G169400--Sobic003G153900 Sobic007G031300 Sobic007G031300 Sobic008G169400--Sobic007G031300 Sobic008G169400--Sobic009G141700 Sobic002G370400 Sobic002G370400 Sobic008G169400--Sobic002G370400 Sobic008G169400--Sobic001G494100 Sobic002G293700 Sobic002G293700 Sobic008G169400--Sobic002G293700 Sobic009G158900 Sobic009G158900 Sobic008G169400--Sobic009G158900 Sobic003G397100 Sobic003G397100 Sobic008G169400--Sobic003G397100 Sobic005G204100--Sobic002G216600 Sobic009G259500 Sobic009G259500 Sobic005G204100--Sobic009G259500 Sobic002G072700 Sobic002G072700 Sobic005G204100--Sobic002G072700 Sobic007G142900 Sobic007G142900 Sobic005G204100--Sobic007G142900 Sobic002G098500 Sobic002G098500 Sobic005G204100--Sobic002G098500 Sobic001G221900 Sobic001G221900 Sobic005G204100--Sobic001G221900 Sobic005G204100--Sobic001G384700 Sobic006G272500 Sobic006G272500 Sobic005G204100--Sobic006G272500 Sobic007G189400 Sobic007G189400 Sobic005G204100--Sobic007G189400 Sobic006G022500 Sobic006G022500 Sobic004G227500--Sobic006G022500 Sobic002G316500 Sobic002G316500 Sobic004G227500--Sobic002G316500 Sobic010G046400 Sobic010G046400 Sobic004G227500--Sobic010G046400 Sobic004G227500--Sobic001G494100 Sobic004G135500 Sobic004G135500 Sobic004G227500--Sobic004G135500 Sobic010G173900 Sobic010G173900 Sobic004G227500--Sobic010G173900 Sobic004G227500--Sobic001G315400 Sobic001G367100 Sobic001G367100 Sobic004G227500--Sobic001G367100 Sobic002G334600 Sobic002G334600 Sobic004G227500--Sobic002G334600 Sobic004G053300 Sobic004G053300 Sobic003G277900--Sobic004G053300 Sobic005G159600 Sobic005G159600 Sobic003G277900--Sobic005G159600 Sobic003G277900--Sobic001G494100 Sobic003G277900--Sobic006G046600 Sobic008G000800 Sobic008G000800 Sobic003G277900--Sobic008G000800 Sobic008G086200 Sobic008G086200 Sobic003G277900--Sobic008G086200 Sobic009G123500 Sobic009G123500 Sobic003G277900--Sobic009G123500 Sobic003G277900--Sobic001G315400 Sobic007G187400 Sobic007G187400 Sobic003G277900--Sobic007G187400 Sobic004G144100 Sobic004G144100 Sobic006G262100--Sobic004G144100 Sobic006G067700 Sobic006G067700 Sobic006G262100--Sobic006G067700 Sobic006G262100--Sobic001G494100 Sobic002G162000 Sobic002G162000 Sobic006G262100--Sobic002G162000 Sobic006G262100--Sobic002G098500 Sobic006G262100--Sobic002G216600 Sobic006G257200 Sobic006G257200 Sobic006G262100--Sobic006G257200 Sobic001G395200 Sobic001G395200 Sobic006G262100--Sobic001G395200 Sobic002G143200 Sobic002G143200 Sobic006G262100--Sobic002G143200 Sobic002G216600--Sobic005G204100 Sobic002G216600--Sobic001G384700 Sobic002G216600--Sobic004G144100 Sobic002G216600--Sobic009G259500 Sobic002G216600--Sobic004G199700 Sobic002G216600--Sobic001G079900 Sobic002G216600--Sobic009G141700 Sobic003G174900 Sobic003G174900 Sobic002G216600--Sobic003G174900 Sobic002G348700 Sobic002G348700 Sobic002G216600--Sobic002G348700 Sobic004G199700--Sobic009G259500 Sobic004G199700--Sobic002G216600 Sobic004G199700--Sobic003G174900 Sobic001G361800 Sobic001G361800 Sobic004G199700--Sobic001G361800 Sobic004G199700--Sobic002G348700 Sobic004G199700--Sobic002G072700 Sobic004G199700--Sobic005G204100 Sobic007G210900 Sobic007G210900 Sobic004G199700--Sobic007G210900 Sobic004G154600 Sobic004G154600 Sobic004G199700--Sobic004G154600 Sobic001G315400--Sobic001G367100 Sobic003G077500 Sobic003G077500 Sobic001G315400--Sobic003G077500 Sobic002G079100 Sobic002G079100 Sobic001G315400--Sobic002G079100 Sobic002G002100 Sobic002G002100 Sobic001G315400--Sobic002G002100 Sobic005G047300 Sobic005G047300 Sobic001G315400--Sobic005G047300 Sobic002G223300 Sobic002G223300 Sobic001G315400--Sobic002G223300 Sobic004G128200 Sobic004G128200 Sobic001G315400--Sobic004G128200 Sobic001G315400--Sobic004G227500 Sobic001G315400--Sobic001G395200
Octagon: transcription factors


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