Gene annotation
Transcriptome id Sobic.003G375000.1
Synonym Sb03g041530
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5XRD1
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF421
NCBI CDD KOG0149; Predicted RNA-binding protein SEB4 (RRM superfamily)
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G33470 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os01g65550.2 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a039518 , Zm00025a026598
Brachypodium KQK10817 , KQK10862 , KQK10863
Barley -
Wheat TraesCS3B02G419200 , TraesCS3B02G419200 , TraesCS3D02G380100 , TraesCS3D02G380100 , TraesCS3A02G499100 , TraesCS3A02G499100 , TraesCS3A02G499100 , TraesCS3A02G389600 , TraesCS3A02G389600
Populus -


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cDNA sequences
Sobic.003G375000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G086200 expressed protein -
2 Sobic.003G174900 fimbrin-like protein 2, putative, expressed K17336: plastin-3
3 Sobic.009G175200 expressed protein -
4 Sobic.007G187400 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
5 Sobic.001G494100 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
6 Sobic.006G248300 "Lypoxygenase, probably induced by oxidative stress, up-regulated under severe drought stress"(PubMedID : 24655390)@lipoxygenase, putative, expressed K15718: linoleate 9S-lipoxygenase
7 Sobic.004G225700 F-box/LRR-repeat protein 2, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
8 Sobic.003G277900 "D61(Ortholog in rice:Morinaka et al., 2006(PubMedID : 31659871)@systemin receptor SR160 precursor, putative, expressed K13415: protein brassinosteroid insensitive 1
9 Sobic.005G204100 kelch repeat protein, putative, expressed -
10 Sobic.010G049300 expressed protein -
11 Sobic.004G205500 expressed protein -
12 Sobic.006G245300 expressed protein -
13 Sobic.009G259500 receptor protein kinase CLAVATA1 precursor, putative, expressed -
14 Sobic.009G064900 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
15 Sobic.010G098600 heat shock protein DnaJ, putative, expressed -
16 Sobic.004G227500 WD-40 repeat family protein, putative, expressed -
17 Sobic.001G352600 expressed protein -
18 Sobic.010G046400 glyoxalase/bleomycin resistance protein/dioxygenase, putative, expressed -
19 Sobic.005G123900 ATP binding protein, putative, expressed K17592: sacsin
20 Sobic.005G146300 Ser/Thr protein phosphatase family protein, putative, expressed K14379: tartrate-resistant acid phosphatase type 5


Gene co-expression network
sample Sobic003G375000 Sobic003G375000 Sobic008G086200 Sobic008G086200 Sobic003G375000--Sobic008G086200 Sobic003G174900 Sobic003G174900 Sobic003G375000--Sobic003G174900 Sobic009G175200 Sobic009G175200 Sobic003G375000--Sobic009G175200 Sobic007G187400 Sobic007G187400 Sobic003G375000--Sobic007G187400 Sobic001G494100 Sobic001G494100 Sobic003G375000--Sobic001G494100 Sobic006G248300 Sobic006G248300 Sobic003G375000--Sobic006G248300 Sobic004G225700 Sobic004G225700 Sobic003G375000--Sobic004G225700 Sobic003G277900 Sobic003G277900 Sobic003G375000--Sobic003G277900 Sobic005G204100 Sobic005G204100 Sobic003G375000--Sobic005G204100 Sobic008G086200--Sobic004G225700 Sobic008G086200--Sobic009G175200 Sobic008G086200--Sobic003G174900 Sobic008G086200--Sobic003G375000 Sobic009G123500 Sobic009G123500 Sobic008G086200--Sobic009G123500 Sobic008G190500 Sobic008G190500 Sobic008G086200--Sobic008G190500 Sobic004G289500 Sobic004G289500 Sobic008G086200--Sobic004G289500 Sobic009G164900 Sobic009G164900 Sobic008G086200--Sobic009G164900 Sobic010G118700 Sobic010G118700 Sobic008G086200--Sobic010G118700 Sobic004G199700 Sobic004G199700 Sobic003G174900--Sobic004G199700 Sobic002G216600 Sobic002G216600 Sobic003G174900--Sobic002G216600 Sobic009G259500 Sobic009G259500 Sobic003G174900--Sobic009G259500 Sobic001G361800 Sobic001G361800 Sobic003G174900--Sobic001G361800 Sobic001G258100 Sobic001G258100 Sobic003G174900--Sobic001G258100 Sobic003G174900--Sobic005G204100 Sobic002G348700 Sobic002G348700 Sobic003G174900--Sobic002G348700 Sobic003G174900--Sobic008G086200 Sobic004G205500 Sobic004G205500 Sobic003G174900--Sobic004G205500 Sobic009G175200--Sobic008G086200 Sobic009G175200--Sobic003G174900 Sobic009G099700 Sobic009G099700 Sobic009G175200--Sobic009G099700 Sobic009G175200--Sobic001G361800 Sobic004G247300 Sobic004G247300 Sobic009G175200--Sobic004G247300 Sobic007G210900 Sobic007G210900 Sobic009G175200--Sobic007G210900 Sobic004G154600 Sobic004G154600 Sobic009G175200--Sobic004G154600 Sobic009G175200--Sobic003G375000 Sobic009G175200--Sobic004G225700 Sobic002G162000 Sobic002G162000 Sobic007G187400--Sobic002G162000 Sobic001G347100 Sobic001G347100 Sobic007G187400--Sobic001G347100 Sobic001G149100 Sobic001G149100 Sobic007G187400--Sobic001G149100 Sobic001G408300 Sobic001G408300 Sobic007G187400--Sobic001G408300 Sobic002G218700 Sobic002G218700 Sobic007G187400--Sobic002G218700 Sobic007G187400--Sobic003G375000 Sobic007G187400--Sobic003G277900 Sobic010G252700 Sobic010G252700 Sobic007G187400--Sobic010G252700 Sobic007G187400--Sobic001G494100 Sobic006G046600 Sobic006G046600 Sobic001G494100--Sobic006G046600 Sobic008G169400 Sobic008G169400 Sobic001G494100--Sobic008G169400 Sobic001G494100--Sobic005G204100 Sobic004G227500 Sobic004G227500 Sobic001G494100--Sobic004G227500 Sobic001G494100--Sobic003G277900 Sobic006G262100 Sobic006G262100 Sobic001G494100--Sobic006G262100 Sobic001G494100--Sobic002G216600 Sobic001G494100--Sobic004G199700 Sobic001G315400 Sobic001G315400 Sobic001G494100--Sobic001G315400 Sobic005G029700 Sobic005G029700 Sobic006G248300--Sobic005G029700 Sobic006G248300--Sobic004G205500 Sobic006G248300--Sobic004G154600 Sobic006G248300--Sobic003G375000 Sobic003G420201 Sobic003G420201 Sobic006G248300--Sobic003G420201 Sobic002G072700 Sobic002G072700 Sobic006G248300--Sobic002G072700 Sobic006G247700 Sobic006G247700 Sobic006G248300--Sobic006G247700 Sobic006G248300--Sobic008G086200 Sobic006G248300--Sobic007G210900 Sobic004G225700--Sobic008G086200 Sobic004G225700--Sobic002G218700 Sobic003G077500 Sobic003G077500 Sobic004G225700--Sobic003G077500 Sobic002G393200 Sobic002G393200 Sobic004G225700--Sobic002G393200 Sobic004G225700--Sobic009G175200 Sobic001G385400 Sobic001G385400 Sobic004G225700--Sobic001G385400 Sobic005G159600 Sobic005G159600 Sobic004G225700--Sobic005G159600 Sobic006G254500 Sobic006G254500 Sobic004G225700--Sobic006G254500 Sobic004G134100 Sobic004G134100 Sobic004G225700--Sobic004G134100 Sobic004G053300 Sobic004G053300 Sobic003G277900--Sobic004G053300 Sobic003G277900--Sobic005G159600 Sobic003G277900--Sobic001G494100 Sobic003G277900--Sobic006G046600 Sobic008G000800 Sobic008G000800 Sobic003G277900--Sobic008G000800 Sobic003G277900--Sobic008G086200 Sobic003G277900--Sobic009G123500 Sobic003G277900--Sobic001G315400 Sobic003G277900--Sobic007G187400 Sobic005G204100--Sobic002G216600 Sobic005G204100--Sobic009G259500 Sobic005G204100--Sobic002G072700 Sobic007G142900 Sobic007G142900 Sobic005G204100--Sobic007G142900 Sobic002G098500 Sobic002G098500 Sobic005G204100--Sobic002G098500 Sobic001G221900 Sobic001G221900 Sobic005G204100--Sobic001G221900 Sobic001G384700 Sobic001G384700 Sobic005G204100--Sobic001G384700 Sobic006G272500 Sobic006G272500 Sobic005G204100--Sobic006G272500 Sobic007G189400 Sobic007G189400 Sobic005G204100--Sobic007G189400
Octagon: transcription factors


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