Gene annotation
Transcriptome id Sobic.004G205500.1
Synonym Sb04g025150
Functional annotation expressed protein
UniProt C5XX55
Pfam PF12796
Panther DB PTHR24198 PTHR24198:SF51
NCBI CDD KOG4412; 26S proteasome regulatory complex, subunit PSMD10
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G01750 : Ankyrin repeat family protein
RAP-DB (Rice) LOC_Os02g38970.2 : expressed protein
MaizeGDB (Corn) Zm00025a020393 , Zm00025a021280
Brachypodium KQK00209 , PNT68977 , KQK00208
Barley HORVU6Hr1G054580.1 , HORVU6Hr1G054580.2 , HORVU6Hr1G054580.3 , HORVU6Hr1G054580.4 , HORVU6Hr1G054580.5 , HORVU3Hr1G033250.2 , HORVU3Hr1G033250.3 , HORVU3Hr1G033250.1 , HORVU3Hr1G033250.6 , HORVU3Hr1G033250.7 , HORVU3Hr1G033250.4 , HORVU3Hr1G033250.5
Wheat TraesCS6B02G243900 , TraesCS6D02G196500 , TraesCS3A02G170800 , TraesCS6A02G213900 , TraesCS3D02G171200 , TraesCS3B02G195800
Populus -


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cDNA sequences
Sobic.004G205500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G154600 expressed protein -
2 Sobic.004G199700 expressed protein -
3 Sobic.003G174900 fimbrin-like protein 2, putative, expressed K17336: plastin-3
4 Sobic.003G420201 - -
5 Sobic.007G210900 expressed protein -
6 Sobic.002G367300 "qGW7/GL7(Ortholog in rice:Wang et al., 2015a(PubMedID : 31659862)@expressed protein -
7 Sobic.002G348700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carboxyl-terminal peptidase, putative, expressed -
8 Sobic.006G248300 "Lypoxygenase, probably induced by oxidative stress, up-regulated under severe drought stress"(PubMedID : 24655390)@lipoxygenase, putative, expressed K15718: linoleate 9S-lipoxygenase
9 Sobic.008G086200 expressed protein -
10 Sobic.004G193800 hydrolase, alpha/beta fold family domain containing protein, expressed K14759: isochorismate synthase / 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / O-succinylbenzoate synthase
11 Sobic.003G380500 expressed protein -
12 Sobic.002G007200 plastocyanin-like domain containing protein, putative, expressed -
13 Sobic.009G164900 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
14 Sobic.009G259500 receptor protein kinase CLAVATA1 precursor, putative, expressed -
15 Sobic.004G240900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower and stem, expression induced by IAA and BR treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
16 Sobic.001G184400 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR55 - Auxin-responsive SAUR gene family member, expressed -
17 Sobic.003G420800 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
18 Sobic.001G352600 expressed protein -
19 Sobic.009G175200 expressed protein -
20 Sobic.009G102800 MRH1, putative, expressed -


Gene co-expression network
sample Sobic004G205500 Sobic004G205500 Sobic004G154600 Sobic004G154600 Sobic004G205500--Sobic004G154600 Sobic004G199700 Sobic004G199700 Sobic004G205500--Sobic004G199700 Sobic003G174900 Sobic003G174900 Sobic004G205500--Sobic003G174900 Sobic003G420201 Sobic003G420201 Sobic004G205500--Sobic003G420201 Sobic007G210900 Sobic007G210900 Sobic004G205500--Sobic007G210900 Sobic002G367300 Sobic002G367300 Sobic004G205500--Sobic002G367300 Sobic002G348700 Sobic002G348700 Sobic004G205500--Sobic002G348700 Sobic006G248300 Sobic006G248300 Sobic004G205500--Sobic006G248300 Sobic008G086200 Sobic008G086200 Sobic004G205500--Sobic008G086200 Sobic009G259500 Sobic009G259500 Sobic004G154600--Sobic009G259500 Sobic004G154600--Sobic004G205500 Sobic004G259101 Sobic004G259101 Sobic004G154600--Sobic004G259101 Sobic004G154600--Sobic007G210900 Sobic004G154600--Sobic004G199700 Sobic002G072700 Sobic002G072700 Sobic004G154600--Sobic002G072700 Sobic004G154600--Sobic003G174900 Sobic004G154600--Sobic002G367300 Sobic006G262600 Sobic006G262600 Sobic004G154600--Sobic006G262600 Sobic004G199700--Sobic009G259500 Sobic002G216600 Sobic002G216600 Sobic004G199700--Sobic002G216600 Sobic004G199700--Sobic003G174900 Sobic001G361800 Sobic001G361800 Sobic004G199700--Sobic001G361800 Sobic004G199700--Sobic002G348700 Sobic004G199700--Sobic002G072700 Sobic005G204100 Sobic005G204100 Sobic004G199700--Sobic005G204100 Sobic004G199700--Sobic007G210900 Sobic004G199700--Sobic004G154600 Sobic003G174900--Sobic004G199700 Sobic003G174900--Sobic002G216600 Sobic003G174900--Sobic009G259500 Sobic003G174900--Sobic001G361800 Sobic001G258100 Sobic001G258100 Sobic003G174900--Sobic001G258100 Sobic003G174900--Sobic005G204100 Sobic003G174900--Sobic002G348700 Sobic003G174900--Sobic008G086200 Sobic003G174900--Sobic004G205500 Sobic004G193800 Sobic004G193800 Sobic003G420201--Sobic004G193800 Sobic002G039600 Sobic002G039600 Sobic003G420201--Sobic002G039600 Sobic003G420201--Sobic004G205500 Sobic004G240900 Sobic004G240900 Sobic003G420201--Sobic004G240900 Sobic003G204000 Sobic003G204000 Sobic003G420201--Sobic003G204000 Sobic008G167300 Sobic008G167300 Sobic003G420201--Sobic008G167300 Sobic006G139300 Sobic006G139300 Sobic003G420201--Sobic006G139300 Sobic006G269600 Sobic006G269600 Sobic003G420201--Sobic006G269600 Sobic007G099500 Sobic007G099500 Sobic003G420201--Sobic007G099500 Sobic003G420800 Sobic003G420800 Sobic007G210900--Sobic003G420800 Sobic007G210900--Sobic004G154600 Sobic007G210900--Sobic004G199700 Sobic002G002100 Sobic002G002100 Sobic007G210900--Sobic002G002100 Sobic007G210900--Sobic002G348700 Sobic007G210900--Sobic004G205500 Sobic006G167300 Sobic006G167300 Sobic007G210900--Sobic006G167300 Sobic008G190500 Sobic008G190500 Sobic007G210900--Sobic008G190500 Sobic002G179700 Sobic002G179700 Sobic007G210900--Sobic002G179700 Sobic002G367300--Sobic006G262600 Sobic010G091700 Sobic010G091700 Sobic002G367300--Sobic010G091700 Sobic001G184400 Sobic001G184400 Sobic002G367300--Sobic001G184400 Sobic009G011500 Sobic009G011500 Sobic002G367300--Sobic009G011500 Sobic003G380500 Sobic003G380500 Sobic002G367300--Sobic003G380500 Sobic002G367300--Sobic004G154600 Sobic002G367300--Sobic004G199700 Sobic002G367300--Sobic003G174900 Sobic002G367300--Sobic004G205500 Sobic002G348700--Sobic002G216600 Sobic002G348700--Sobic004G199700 Sobic002G348700--Sobic003G174900 Sobic002G348700--Sobic007G210900 Sobic002G348700--Sobic004G205500 Sobic002G348700--Sobic003G420800 Sobic002G348700--Sobic009G259500 Sobic002G348700--Sobic006G167300 Sobic009G164900 Sobic009G164900 Sobic002G348700--Sobic009G164900 Sobic005G029700 Sobic005G029700 Sobic006G248300--Sobic005G029700 Sobic006G248300--Sobic004G205500 Sobic006G248300--Sobic004G154600 Sobic003G375000 Sobic003G375000 Sobic006G248300--Sobic003G375000 Sobic006G248300--Sobic003G420201 Sobic006G248300--Sobic002G072700 Sobic006G247700 Sobic006G247700 Sobic006G248300--Sobic006G247700 Sobic006G248300--Sobic008G086200 Sobic006G248300--Sobic007G210900 Sobic004G225700 Sobic004G225700 Sobic008G086200--Sobic004G225700 Sobic009G175200 Sobic009G175200 Sobic008G086200--Sobic009G175200 Sobic008G086200--Sobic003G174900 Sobic008G086200--Sobic003G375000 Sobic009G123500 Sobic009G123500 Sobic008G086200--Sobic009G123500 Sobic008G086200--Sobic008G190500 Sobic004G289500 Sobic004G289500 Sobic008G086200--Sobic004G289500 Sobic008G086200--Sobic009G164900 Sobic010G118700 Sobic010G118700 Sobic008G086200--Sobic010G118700
Octagon: transcription factors


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