Gene annotation
Transcriptome id Sobic.006G248300.1
Synonym Sb06g031350, LOX5
Functional annotation "Lypoxygenase, probably induced by oxidative stress, up-regulated under severe drought stress" (PubMedID : 24655390)
lipoxygenase, putative, expressed
UniProt C9DHL7 , A0A1B6PNR0
Pfam PF00305
Panther DB PTHR11771 PTHR11771:SF53
NCBI CDD -
KEGG Orthology K15718; linoleate 9S-lipoxygenase
Gene Ontology GO:0016702; oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen


Orthologs (automatic annotation)
TAIR AT3G22400 : PLAT/LH2 domain-containing lipoxygenase family protein
RAP-DB (Rice) LOC_Os03g49380.1 : lipoxygenase, putative, expressed
MaizeGDB (Corn) Zm00025a009463
Brachypodium -
Barley HORVU2Hr1G115960.2 , HORVU2Hr1G115960.3 , HORVU2Hr1G115960.1 , HORVU2Hr1G115960.6 , HORVU2Hr1G115960.7 , HORVU2Hr1G115960.4 , HORVU2Hr1G115960.5 , HORVU2Hr1G115960.8 , HORVU2Hr1G115960.9 , HORVU2Hr1G115960.10 , HORVU2Hr1G115960.11 , HORVU2Hr1G115960.12
Wheat TraesCS2A02G525500 , TraesCS2A02G525500 , TraesCS2B02G555400 , TraesCS2B02G555400 , TraesCS2B02G555400 , TraesCS2D02G528400 , TraesCS2D02G528500 , TraesCS2D02G528500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G248300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G029700 BTBA6 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed K14508: regulatory protein NPR1
2 Sobic.004G205500 expressed protein -
3 Sobic.004G154600 expressed protein -
4 Sobic.003G375000 RNA recognition motif containing protein, putative, expressed -
5 Sobic.003G420201 - -
6 Sobic.002G072700 carboxyl-terminal peptidase, putative, expressed -
7 Sobic.006G247700 Highest expression level in primordial inflorescence(PubMedID : 27501690)@-(PubMedID : 23108465)@OsSPL8 - SBP-box gene family member, expressed -
8 Sobic.008G086200 expressed protein -
9 Sobic.007G210900 expressed protein -
10 Sobic.009G259500 receptor protein kinase CLAVATA1 precursor, putative, expressed -
11 Sobic.005G204100 kelch repeat protein, putative, expressed -
12 Sobic.004G199700 expressed protein -
13 Sobic.004G148600 ankyrin, putative, expressed -
14 Sobic.001G228100 gene responsible for epi-cuticular wax accumulation in sorghum.(PubMedID : 29379518)@GDSL-like lipase/acylhydrolase, putative, expressed -
15 Sobic.001G356400 expansin precursor, putative, expressed -
16 Sobic.001G494100 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
17 Sobic.009G175200 expressed protein -
18 Sobic.004G193800 hydrolase, alpha/beta fold family domain containing protein, expressed K14759: isochorismate synthase / 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / O-succinylbenzoate synthase
19 Sobic.002G316000 expressed protein -
20 Sobic.006G269600 zinc finger, RING-type, putative, expressed -


Gene co-expression network
sample Sobic006G248300 Sobic006G248300 Sobic005G029700 Sobic005G029700 Sobic006G248300--Sobic005G029700 Sobic004G205500 Sobic004G205500 Sobic006G248300--Sobic004G205500 Sobic004G154600 Sobic004G154600 Sobic006G248300--Sobic004G154600 Sobic003G375000 Sobic003G375000 Sobic006G248300--Sobic003G375000 Sobic003G420201 Sobic003G420201 Sobic006G248300--Sobic003G420201 Sobic002G072700 Sobic002G072700 Sobic006G248300--Sobic002G072700 Sobic006G247700 Sobic006G247700 Sobic006G248300--Sobic006G247700 Sobic008G086200 Sobic008G086200 Sobic006G248300--Sobic008G086200 Sobic007G210900 Sobic007G210900 Sobic006G248300--Sobic007G210900 Sobic001G228100 Sobic001G228100 Sobic005G029700--Sobic001G228100 Sobic005G029700--Sobic006G247700 Sobic005G029700--Sobic002G072700 Sobic007G189400 Sobic007G189400 Sobic005G029700--Sobic007G189400 Sobic001G221900 Sobic001G221900 Sobic005G029700--Sobic001G221900 Sobic005G204100 Sobic005G204100 Sobic005G029700--Sobic005G204100 Sobic003G339600 Sobic003G339600 Sobic005G029700--Sobic003G339600 Sobic007G142900 Sobic007G142900 Sobic005G029700--Sobic007G142900 Sobic002G315000 Sobic002G315000 Sobic005G029700--Sobic002G315000 Sobic004G205500--Sobic004G154600 Sobic004G199700 Sobic004G199700 Sobic004G205500--Sobic004G199700 Sobic003G174900 Sobic003G174900 Sobic004G205500--Sobic003G174900 Sobic004G205500--Sobic003G420201 Sobic004G205500--Sobic007G210900 Sobic002G367300 Sobic002G367300 Sobic004G205500--Sobic002G367300 Sobic002G348700 Sobic002G348700 Sobic004G205500--Sobic002G348700 Sobic004G205500--Sobic006G248300 Sobic004G205500--Sobic008G086200 Sobic009G259500 Sobic009G259500 Sobic004G154600--Sobic009G259500 Sobic004G154600--Sobic004G205500 Sobic004G259101 Sobic004G259101 Sobic004G154600--Sobic004G259101 Sobic004G154600--Sobic007G210900 Sobic004G154600--Sobic004G199700 Sobic004G154600--Sobic002G072700 Sobic004G154600--Sobic003G174900 Sobic004G154600--Sobic002G367300 Sobic006G262600 Sobic006G262600 Sobic004G154600--Sobic006G262600 Sobic003G375000--Sobic008G086200 Sobic003G375000--Sobic003G174900 Sobic009G175200 Sobic009G175200 Sobic003G375000--Sobic009G175200 Sobic007G187400 Sobic007G187400 Sobic003G375000--Sobic007G187400 Sobic001G494100 Sobic001G494100 Sobic003G375000--Sobic001G494100 Sobic003G375000--Sobic006G248300 Sobic004G225700 Sobic004G225700 Sobic003G375000--Sobic004G225700 Sobic003G277900 Sobic003G277900 Sobic003G375000--Sobic003G277900 Sobic003G375000--Sobic005G204100 Sobic004G193800 Sobic004G193800 Sobic003G420201--Sobic004G193800 Sobic002G039600 Sobic002G039600 Sobic003G420201--Sobic002G039600 Sobic003G420201--Sobic004G205500 Sobic004G240900 Sobic004G240900 Sobic003G420201--Sobic004G240900 Sobic003G204000 Sobic003G204000 Sobic003G420201--Sobic003G204000 Sobic008G167300 Sobic008G167300 Sobic003G420201--Sobic008G167300 Sobic006G139300 Sobic006G139300 Sobic003G420201--Sobic006G139300 Sobic006G269600 Sobic006G269600 Sobic003G420201--Sobic006G269600 Sobic007G099500 Sobic007G099500 Sobic003G420201--Sobic007G099500 Sobic002G072700--Sobic007G189400 Sobic002G072700--Sobic001G228100 Sobic002G072700--Sobic005G029700 Sobic002G072700--Sobic005G204100 Sobic002G139800 Sobic002G139800 Sobic002G072700--Sobic002G139800 Sobic002G072700--Sobic007G142900 Sobic002G072700--Sobic001G221900 Sobic002G072700--Sobic009G259500 Sobic002G072700--Sobic006G247700 Sobic006G247700--Sobic005G029700 Sobic006G247700--Sobic001G228100 Sobic006G247700--Sobic002G072700 Sobic006G247700--Sobic002G139800 Sobic009G037300 Sobic009G037300 Sobic006G247700--Sobic009G037300 Sobic009G254500 Sobic009G254500 Sobic006G247700--Sobic009G254500 Sobic006G181600 Sobic006G181600 Sobic006G247700--Sobic006G181600 Sobic006G247700--Sobic007G189400 Sobic005G110900 Sobic005G110900 Sobic006G247700--Sobic005G110900 Sobic008G086200--Sobic004G225700 Sobic008G086200--Sobic009G175200 Sobic008G086200--Sobic003G174900 Sobic008G086200--Sobic003G375000 Sobic009G123500 Sobic009G123500 Sobic008G086200--Sobic009G123500 Sobic008G190500 Sobic008G190500 Sobic008G086200--Sobic008G190500 Sobic004G289500 Sobic004G289500 Sobic008G086200--Sobic004G289500 Sobic009G164900 Sobic009G164900 Sobic008G086200--Sobic009G164900 Sobic010G118700 Sobic010G118700 Sobic008G086200--Sobic010G118700 Sobic003G420800 Sobic003G420800 Sobic007G210900--Sobic003G420800 Sobic007G210900--Sobic004G154600 Sobic007G210900--Sobic004G199700 Sobic002G002100 Sobic002G002100 Sobic007G210900--Sobic002G002100 Sobic007G210900--Sobic002G348700 Sobic007G210900--Sobic004G205500 Sobic006G167300 Sobic006G167300 Sobic007G210900--Sobic006G167300 Sobic007G210900--Sobic008G190500 Sobic002G179700 Sobic002G179700 Sobic007G210900--Sobic002G179700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.