Gene annotation
Transcriptome id Sobic.001G356400.1
Synonym ATEXP10, Sb01g034050, ATHEXPALPHA1.1, ATEXPA10, EXP10, EXPA10, AT-EXP10
Functional annotation expansin precursor, putative, expressed
UniProt C5WYL8
Pfam PF03330 PF01357
Panther DB PTHR31867
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G69530 : expansin A1
RAP-DB (Rice) LOC_Os02g51040.1 : expansin precursor, putative, expressed
MaizeGDB (Corn) Zm00025a023908 , Zm00025a040297 , Zm00025a006817 , Zm00025a006811 , Zm00025a040299
Brachypodium KQJ94340 , KQJ97590 , KQK21504
Barley HORVU4Hr1G018460.5 , HORVU4Hr1G018460.4 , HORVU4Hr1G018460.1 , HORVU4Hr1G018460.3 , HORVU4Hr1G072400.1
Wheat TraesCS4B02G271100 , TraesCS3B02G376800 , TraesCS7D02G387400 , TraesCS7D02G387400 , TraesCS4D02G270200 , TraesCS3B02G376900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G072700 carboxyl-terminal peptidase, putative, expressed -
2 Sobic.007G189400 BEE 1, putative, expressed -
3 Sobic.009G154100 expressed protein -
4 Sobic.005G209900 expressed protein -
5 Sobic.005G227050 - -
6 Sobic.002G179700 3-ketoacyl-CoA synthase precursor, putative, expressed K15397: 3-ketoacyl-CoA synthase
7 Sobic.001G228100 gene responsible for epi-cuticular wax accumulation in sorghum.(PubMedID : 29379518)@GDSL-like lipase/acylhydrolase, putative, expressed -
8 Sobic.005G188500 expressed protein -
9 Sobic.002G315000 - -
10 Sobic.003G299700 TCP4(PubMedID : 24676859)@CIN-like (ClassII) Subclade 16 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@slTCP3, putative, expressed -
11 Sobic.001G488400 "PGL1(Ortholog in rice:Heang and Sassa, 2012)"(PubMedID : 31659850)@bHLH family protein, putative, expressed -
12 Sobic.006G181600 MYB family transcription factor, putative, expressed -
13 Sobic.006G125800 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
14 Sobic.005G196500 embryogenesis transmembrane protein, putative, expressed -
15 Sobic.007G012800 Leucine Rich Repeat family protein, expressed -
16 Sobic.005G029700 BTBA6 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed K14508: regulatory protein NPR1
17 Sobic.006G032800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed -
18 Sobic.002G139800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
19 Sobic.008G158000 expressed protein -
20 Sobic.002G260600 BEE 1, putative, expressed -


Gene co-expression network
sample Sobic001G356400 Sobic001G356400 Sobic002G072700 Sobic002G072700 Sobic001G356400--Sobic002G072700 Sobic007G189400 Sobic007G189400 Sobic001G356400--Sobic007G189400 Sobic009G154100 Sobic009G154100 Sobic001G356400--Sobic009G154100 Sobic005G209900 Sobic005G209900 Sobic001G356400--Sobic005G209900 Sobic005G227050 Sobic005G227050 Sobic001G356400--Sobic005G227050 Sobic002G179700 Sobic002G179700 Sobic001G356400--Sobic002G179700 Sobic001G228100 Sobic001G228100 Sobic001G356400--Sobic001G228100 Sobic005G188500 Sobic005G188500 Sobic001G356400--Sobic005G188500 Sobic002G315000 Sobic002G315000 Sobic001G356400--Sobic002G315000 Sobic002G072700--Sobic007G189400 Sobic002G072700--Sobic001G228100 Sobic005G029700 Sobic005G029700 Sobic002G072700--Sobic005G029700 Sobic005G204100 Sobic005G204100 Sobic002G072700--Sobic005G204100 Sobic002G139800 Sobic002G139800 Sobic002G072700--Sobic002G139800 Sobic007G142900 Sobic007G142900 Sobic002G072700--Sobic007G142900 Sobic001G221900 Sobic001G221900 Sobic002G072700--Sobic001G221900 Sobic009G259500 Sobic009G259500 Sobic002G072700--Sobic009G259500 Sobic006G247700 Sobic006G247700 Sobic002G072700--Sobic006G247700 Sobic007G189400--Sobic002G072700 Sobic007G189400--Sobic005G188500 Sobic009G254500 Sobic009G254500 Sobic007G189400--Sobic009G254500 Sobic003G339600 Sobic003G339600 Sobic007G189400--Sobic003G339600 Sobic001G488400 Sobic001G488400 Sobic007G189400--Sobic001G488400 Sobic010G020600 Sobic010G020600 Sobic007G189400--Sobic010G020600 Sobic006G044200 Sobic006G044200 Sobic007G189400--Sobic006G044200 Sobic001G119200 Sobic001G119200 Sobic007G189400--Sobic001G119200 Sobic007G189400--Sobic002G139800 Sobic010G107200 Sobic010G107200 Sobic009G154100--Sobic010G107200 Sobic009G154100--Sobic005G209900 Sobic009G154100--Sobic002G315000 Sobic007G012800 Sobic007G012800 Sobic009G154100--Sobic007G012800 Sobic009G154100--Sobic002G179700 Sobic009G154100--Sobic007G189400 Sobic009G154100--Sobic005G227050 Sobic009G154100--Sobic001G221900 Sobic006G032800 Sobic006G032800 Sobic009G154100--Sobic006G032800 Sobic005G209900--Sobic010G107200 Sobic005G196500 Sobic005G196500 Sobic005G209900--Sobic005G196500 Sobic005G209900--Sobic009G154100 Sobic005G209900--Sobic005G227050 Sobic006G233600 Sobic006G233600 Sobic005G209900--Sobic006G233600 Sobic005G209900--Sobic007G012800 Sobic007G142300 Sobic007G142300 Sobic005G209900--Sobic007G142300 Sobic005G147800 Sobic005G147800 Sobic005G209900--Sobic005G147800 Sobic005G209900--Sobic002G179700 Sobic005G227050--Sobic005G209900 Sobic005G227050--Sobic005G196500 Sobic005G227050--Sobic009G154100 Sobic005G227050--Sobic002G179700 Sobic005G227050--Sobic001G356400 Sobic005G227050--Sobic010G107200 Sobic006G001400 Sobic006G001400 Sobic005G227050--Sobic006G001400 Sobic007G103800 Sobic007G103800 Sobic005G227050--Sobic007G103800 Sobic007G123200 Sobic007G123200 Sobic005G227050--Sobic007G123200 Sobic002G179700--Sobic009G154100 Sobic002G179700--Sobic005G227050 Sobic002G179700--Sobic005G209900 Sobic002G179700--Sobic001G356400 Sobic002G179700--Sobic005G196500 Sobic002G179700--Sobic006G233600 Sobic002G179700--Sobic010G107200 Sobic002G179700--Sobic002G315000 Sobic002G179700--Sobic002G072700 Sobic001G228100--Sobic005G029700 Sobic001G228100--Sobic002G072700 Sobic001G228100--Sobic006G247700 Sobic009G037300 Sobic009G037300 Sobic001G228100--Sobic009G037300 Sobic001G228100--Sobic001G221900 Sobic001G228100--Sobic007G189400 Sobic001G228100--Sobic009G254500 Sobic001G228100--Sobic003G339600 Sobic010G027700 Sobic010G027700 Sobic001G228100--Sobic010G027700 Sobic005G188500--Sobic001G488400 Sobic005G188500--Sobic006G044200 Sobic005G188500--Sobic007G189400 Sobic005G188500--Sobic006G032800 Sobic005G188500--Sobic007G012800 Sobic008G035400 Sobic008G035400 Sobic005G188500--Sobic008G035400 Sobic010G065700 Sobic010G065700 Sobic005G188500--Sobic010G065700 Sobic005G188500--Sobic005G209900 Sobic005G188500--Sobic010G107200 Sobic002G315000--Sobic009G154100 Sobic003G333000 Sobic003G333000 Sobic002G315000--Sobic003G333000 Sobic003G420800 Sobic003G420800 Sobic002G315000--Sobic003G420800 Sobic002G315000--Sobic001G221900 Sobic002G315000--Sobic001G228100 Sobic002G315000--Sobic005G227050 Sobic002G315000--Sobic002G072700 Sobic001G482300 Sobic001G482300 Sobic002G315000--Sobic001G482300 Sobic002G315000--Sobic002G179700
Octagon: transcription factors


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