Gene annotation
Transcriptome id Sobic.003G299700.1
Synonym Sb03g034918, TCP4, MEE35,TCP-like gene;SbTCP8;SbTCP8
Functional annotation TCP4 (PubMedID : 24676859)
CIN-like (ClassII) Subclade 16 TCP (PubMedID : 21444336)
"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)." (PubMedID : 27917941)
"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)" (PubMedID : 28383054)
slTCP3, putative, expressed
UniProt A0A1B6Q651
Pfam PF03634
Panther DB PTHR31072 PTHR31072:SF16
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G15030 : TCP family transcription factor 4
RAP-DB (Rice) LOC_Os01g55100.1 : slTCP3, putative, expressed
MaizeGDB (Corn) Zm00025a022913 , Zm00025a040029 , Zm00025a027530
Brachypodium PNT72876
Barley HORVU0Hr1G006890.1 , HORVU3Hr1G028240.5 , HORVU3Hr1G028240.4 , HORVU3Hr1G028240.6 , HORVU3Hr1G028240.1 , HORVU3Hr1G028240.3 , HORVU3Hr1G028240.2 , HORVU3Hr1G072670.3 , HORVU3Hr1G072670.2 , HORVU3Hr1G072670.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G356400 expansin precursor, putative, expressed -
2 Sobic.006G181600 MYB family transcription factor, putative, expressed -
3 Sobic.009G154100 expressed protein -
4 Sobic.001G482300 3-ketoacyl-CoA synthase 10, putative, expressed K15397: 3-ketoacyl-CoA synthase
5 Sobic.007G189400 BEE 1, putative, expressed -
6 Sobic.007G142900 receptor-like kinase, putative, expressed -
7 Sobic.002G072700 carboxyl-terminal peptidase, putative, expressed -
8 Sobic.006G125800 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
9 Sobic.002G315000 - -
10 Sobic.005G204100 kelch repeat protein, putative, expressed -
11 Sobic.003G096300 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
12 Sobic.006G247700 Highest expression level in primordial inflorescence(PubMedID : 27501690)@-(PubMedID : 23108465)@OsSPL8 - SBP-box gene family member, expressed -
13 Sobic.002G179700 3-ketoacyl-CoA synthase precursor, putative, expressed K15397: 3-ketoacyl-CoA synthase
14 Sobic.005G209900 expressed protein -
15 Sobic.001G228100 gene responsible for epi-cuticular wax accumulation in sorghum.(PubMedID : 29379518)@GDSL-like lipase/acylhydrolase, putative, expressed -
16 Sobic.002G098500 H-BTB6 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
17 Sobic.005G029700 BTBA6 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed K14508: regulatory protein NPR1
18 Sobic.002G272400 expressed protein -
19 Sobic.005G188500 expressed protein -
20 Sobic.005G227050 - -


Gene co-expression network
sample Sobic003G299700 Sobic003G299700 Sobic001G356400 Sobic001G356400 Sobic003G299700--Sobic001G356400 Sobic006G181600 Sobic006G181600 Sobic003G299700--Sobic006G181600 Sobic009G154100 Sobic009G154100 Sobic003G299700--Sobic009G154100 Sobic001G482300 Sobic001G482300 Sobic003G299700--Sobic001G482300 Sobic007G189400 Sobic007G189400 Sobic003G299700--Sobic007G189400 Sobic007G142900 Sobic007G142900 Sobic003G299700--Sobic007G142900 Sobic002G072700 Sobic002G072700 Sobic003G299700--Sobic002G072700 Sobic006G125800 Sobic006G125800 Sobic003G299700--Sobic006G125800 Sobic002G315000 Sobic002G315000 Sobic003G299700--Sobic002G315000 Sobic001G356400--Sobic002G072700 Sobic001G356400--Sobic007G189400 Sobic001G356400--Sobic009G154100 Sobic005G209900 Sobic005G209900 Sobic001G356400--Sobic005G209900 Sobic005G227050 Sobic005G227050 Sobic001G356400--Sobic005G227050 Sobic002G179700 Sobic002G179700 Sobic001G356400--Sobic002G179700 Sobic001G228100 Sobic001G228100 Sobic001G356400--Sobic001G228100 Sobic005G188500 Sobic005G188500 Sobic001G356400--Sobic005G188500 Sobic001G356400--Sobic002G315000 Sobic002G139800 Sobic002G139800 Sobic006G181600--Sobic002G139800 Sobic006G181600--Sobic007G189400 Sobic006G181600--Sobic001G228100 Sobic006G181600--Sobic002G072700 Sobic009G254500 Sobic009G254500 Sobic006G181600--Sobic009G254500 Sobic006G247700 Sobic006G247700 Sobic006G181600--Sobic006G247700 Sobic001G438500 Sobic001G438500 Sobic006G181600--Sobic001G438500 Sobic009G141300 Sobic009G141300 Sobic006G181600--Sobic009G141300 Sobic006G181600--Sobic005G188500 Sobic010G107200 Sobic010G107200 Sobic009G154100--Sobic010G107200 Sobic009G154100--Sobic005G209900 Sobic009G154100--Sobic002G315000 Sobic007G012800 Sobic007G012800 Sobic009G154100--Sobic007G012800 Sobic009G154100--Sobic002G179700 Sobic009G154100--Sobic007G189400 Sobic009G154100--Sobic005G227050 Sobic001G221900 Sobic001G221900 Sobic009G154100--Sobic001G221900 Sobic006G032800 Sobic006G032800 Sobic009G154100--Sobic006G032800 Sobic003G096300 Sobic003G096300 Sobic001G482300--Sobic003G096300 Sobic001G482300--Sobic002G315000 Sobic003G420800 Sobic003G420800 Sobic001G482300--Sobic003G420800 Sobic001G047200 Sobic001G047200 Sobic001G482300--Sobic001G047200 Sobic002G064400 Sobic002G064400 Sobic001G482300--Sobic002G064400 Sobic005G204100 Sobic005G204100 Sobic001G482300--Sobic005G204100 Sobic009G083300 Sobic009G083300 Sobic001G482300--Sobic009G083300 Sobic008G038200 Sobic008G038200 Sobic001G482300--Sobic008G038200 Sobic001G370000 Sobic001G370000 Sobic001G482300--Sobic001G370000 Sobic007G189400--Sobic002G072700 Sobic007G189400--Sobic005G188500 Sobic007G189400--Sobic009G254500 Sobic003G339600 Sobic003G339600 Sobic007G189400--Sobic003G339600 Sobic001G488400 Sobic001G488400 Sobic007G189400--Sobic001G488400 Sobic010G020600 Sobic010G020600 Sobic007G189400--Sobic010G020600 Sobic006G044200 Sobic006G044200 Sobic007G189400--Sobic006G044200 Sobic001G119200 Sobic001G119200 Sobic007G189400--Sobic001G119200 Sobic007G189400--Sobic002G139800 Sobic007G142900--Sobic002G072700 Sobic007G142900--Sobic005G204100 Sobic009G259500 Sobic009G259500 Sobic007G142900--Sobic009G259500 Sobic007G142900--Sobic007G189400 Sobic002G216600 Sobic002G216600 Sobic007G142900--Sobic002G216600 Sobic004G168600 Sobic004G168600 Sobic007G142900--Sobic004G168600 Sobic008G136100 Sobic008G136100 Sobic007G142900--Sobic008G136100 Sobic010G180800 Sobic010G180800 Sobic007G142900--Sobic010G180800 Sobic006G201600 Sobic006G201600 Sobic007G142900--Sobic006G201600 Sobic002G072700--Sobic007G189400 Sobic002G072700--Sobic001G228100 Sobic005G029700 Sobic005G029700 Sobic002G072700--Sobic005G029700 Sobic002G072700--Sobic005G204100 Sobic002G072700--Sobic002G139800 Sobic002G072700--Sobic007G142900 Sobic002G072700--Sobic001G221900 Sobic002G072700--Sobic009G259500 Sobic002G072700--Sobic006G247700 Sobic009G235700 Sobic009G235700 Sobic006G125800--Sobic009G235700 Sobic006G125800--Sobic003G339600 Sobic006G125800--Sobic010G020600 Sobic002G382500 Sobic002G382500 Sobic006G125800--Sobic002G382500 Sobic006G125800--Sobic001G221900 Sobic004G283800 Sobic004G283800 Sobic006G125800--Sobic004G283800 Sobic006G125800--Sobic010G107200 Sobic002G419200 Sobic002G419200 Sobic006G125800--Sobic002G419200 Sobic003G360700 Sobic003G360700 Sobic006G125800--Sobic003G360700 Sobic002G315000--Sobic009G154100 Sobic003G333000 Sobic003G333000 Sobic002G315000--Sobic003G333000 Sobic002G315000--Sobic003G420800 Sobic002G315000--Sobic001G221900 Sobic002G315000--Sobic001G228100 Sobic002G315000--Sobic005G227050 Sobic002G315000--Sobic002G072700 Sobic002G315000--Sobic001G482300 Sobic002G315000--Sobic002G179700
Octagon: transcription factors


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