Gene annotation
Transcriptome id Sobic.009G164900.1
Synonym Sb09g022690, HTA12
Functional annotation Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
UniProt C5YZA9
Pfam PF00125 PF16211
Panther DB PTHR23430
NCBI CDD KOG1756; Histone 2A
KEGG Orthology K11251; histone H2A
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT5G02560 : histone H2A 12
RAP-DB (Rice) LOC_Os05g38640.1 : Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a028432 , Zm00025a052735 , Zm00025a043907 , Zm00025a014436 , Zm00025a007941 , Zm00025a048317
Brachypodium KQK11794 , KQJ86512 , KQK07730 , KQK05873 , KQK15863 , KQK13476 , KQK22303 , KQJ89933
Barley HORVU3Hr1G014560.1 , HORVU1Hr1G071950.1 , HORVU3Hr1G099160.1 , HORVU3Hr1G116550.3 , HORVU3Hr1G116550.2 , HORVU3Hr1G116550.1 , HORVU4Hr1G029280.1 , HORVU3Hr1G116550.5 , HORVU3Hr1G116550.4 , HORVU7Hr1G096660.2 , HORVU7Hr1G096660.1 , HORVU0Hr1G016940.1 , HORVU0Hr1G016940.2 , HORVU0Hr1G016940.3 , HORVU6Hr1G006120.1 , HORVU4Hr1G058940.8 , HORVU6Hr1G006120.2 , HORVU4Hr1G058940.2 , HORVU4Hr1G058940.3 , HORVU6Hr1G092390.1 , HORVU4Hr1G058940.1 , HORVU4Hr1G058940.6 , HORVU4Hr1G058940.7 , HORVU4Hr1G058940.4 , HORVU4Hr1G058940.5 , HORVU7Hr1G100100.3 , HORVU7Hr1G100100.2 , HORVU7Hr1G100100.1 , HORVU7Hr1G117230.2 , HORVU7Hr1G030120.1 , HORVU7Hr1G030120.2 , HORVU0Hr1G013190.1 , HORVU0Hr1G013190.2 , HORVU5Hr1G026650.6 , HORVU5Hr1G026650.7 , HORVU5Hr1G026650.4 , HORVU5Hr1G026650.5 , HORVU5Hr1G026650.2 , HORVU5Hr1G026650.3 , HORVU5Hr1G026650.1 , HORVU6Hr1G029220.1 , HORVU7Hr1G112470.1 , HORVU7Hr1G112470.2 , HORVU7Hr1G112470.3 , HORVU7Hr1G117230.1 , HORVU6Hr1G029220.3 , HORVU6Hr1G029220.2 , HORVU6Hr1G003750.1 , HORVU7Hr1G117230.3 , HORVU4Hr1G090910.2 , HORVU5Hr1G069680.1 , HORVU1Hr1G005870.1 , HORVU1Hr1G005870.3 , HORVU1Hr1G005870.2 , HORVU6Hr1G011620.2 , HORVU6Hr1G011620.3 , HORVU6Hr1G011620.1 , HORVU6Hr1G011620.4 , HORVU6Hr1G005960.1 , HORVU6Hr1G005960.2 , HORVU6Hr1G005960.3 , HORVU6Hr1G005960.4 , HORVU6Hr1G005960.5 , HORVU6Hr1G005960.6 , HORVU6Hr1G005960.7 , HORVU6Hr1G005960.8 , HORVU6Hr1G005960.9 , HORVU5Hr1G110680.1 , HORVU6Hr1G006090.1 , HORVU2Hr1G043860.2 , HORVU2Hr1G043860.1 , HORVU5Hr1G090670.1 , HORVU5Hr1G090670.2 , HORVU6Hr1G006080.2 , HORVU6Hr1G006080.1 , HORVU6Hr1G092280.1 , HORVU4Hr1G058810.1 , HORVU2Hr1G110470.3 , HORVU2Hr1G110470.2 , HORVU2Hr1G110470.1 , HORVU6Hr1G092280.2 , HORVU5Hr1G069690.2 , HORVU5Hr1G069690.1 , HORVU5Hr1G108640.1 , HORVU1Hr1G071960.3 , HORVU1Hr1G071960.4 , HORVU6Hr1G011490.4 , HORVU6Hr1G011490.1 , HORVU1Hr1G071960.1 , HORVU1Hr1G071960.2 , HORVU6Hr1G011490.2 , HORVU4Hr1G008800.2 , HORVU4Hr1G008800.1 , HORVU7Hr1G100400.2 , HORVU7Hr1G100400.1 , HORVU5Hr1G082190.1 , HORVU6Hr1G006140.2 , HORVU6Hr1G006140.1 , HORVU7Hr1G100120.3 , HORVU7Hr1G100120.2 , HORVU7Hr1G100120.5 , HORVU7Hr1G100120.7 , HORVU7Hr1G100120.6 , HORVU7Hr1G100120.9 , HORVU7Hr1G100120.8 , HORVU7Hr1G100120.14 , HORVU7Hr1G100120.11 , HORVU7Hr1G100120.10 , HORVU7Hr1G100120.13 , HORVU7Hr1G100120.12 , HORVU6Hr1G005960.10 , HORVU6Hr1G006130.6 , HORVU6Hr1G006130.7 , HORVU6Hr1G006130.5 , HORVU6Hr1G009020.1 , HORVU6Hr1G005940.6 , HORVU6Hr1G005940.5 , HORVU6Hr1G005940.2 , HORVU6Hr1G005940.3 , HORVU6Hr1G005940.1
Wheat TraesCS6B02G049200 , TraesCS6B02G049000 , TraesCS1B02G049100 , TraesCS6B02G048700 , TraesCS1A02G038200 , TraesCS2D02G220400 , TraesCS5A02G098300 , TraesCS1A02G286900 , TraesCS3D02G521700 , TraesCS6B02G082100 , TraesCS6D02G062300 , TraesCS6D02G062800 , TraesCS3A02G534300 , TraesCS1B02G296300 , TraesCS6A02G034600 , TraesCS1B02G357400 , TraesCS6A02G062600 , TraesCS6D02G040700 , TraesCS3D02G539300 , TraesCS7D02G520000 , TraesCS7B02G449800 , TraesCS6A02G075400 , TraesCS4D02G053100 , TraesCS6A02G034300 , TraesCS1A02G038100 , TraesCS2B02G239700 , TraesCS2A02G214700 , TraesCS6A02G034900 , TraesCS7B02G050300 , TraesCS7D02G488500 , TraesCS6B02G082300 , TraesCS1D02G285800 , TraesCS6B02G082500 , TraesCS6B02G049500 , TraesCS6D02G040800 , TraesCS5B02G473100 , TraesCS6A02G034800 , TraesCS5D02G110600 , TraesCS3A02G534100 , TraesCS2A02G214600 , TraesCS5B02G103600 , TraesCS6B02G048300 , TraesCS1D02G039900 , TraesCS5D02G474800 , TraesCS6D02G039900 , TraesCS6B02G058400 , TraesCS1B02G048900 , TraesCS6A02G035100 , TraesCS6B02G082400 , TraesCS6D02G040400 , TraesCS6A02G035200 , TraesCS6D02G040300 , TraesCS6B02G048600 , TraesCS2B02G239600 , TraesCS6D02G040500 , TraesCS4B02G052900 , TraesCS2D02G220500 , TraesCS6A02G061700 , TraesCS7B02G408300 , TraesCS1D02G039800 , TraesCS3B02G610800 , TraesCS3D02G539700 , TraesCS7B02G408400 , TraesCS6B02G049400 , TraesCS5A02G462100 , TraesCS6A02G042700
Populus -


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cDNA sequences
Sobic.009G164900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G007200 plastocyanin-like domain containing protein, putative, expressed -
2 Sobic.003G380500 expressed protein -
3 Sobic.001G216600 zinc finger, C3HC4 type domain containing protein, expressed -
4 Sobic.003G356200 homeodomain protein, putative, expressed -
5 Sobic.001G217100 double-stranded RNA binding motif containing protein, expressed -
6 Sobic.004G229100 OsFBX61 - F-box domain containing protein, expressed -
7 Sobic.009G011500 expressed protein -
8 Sobic.007G195400 FHA domain containing protein, putative, expressed -
9 Sobic.002G157200 expressed protein -
10 Sobic.002G049000 frigida, putative, expressed -
11 Sobic.002G334600 OsFBX251 - F-box domain containing protein, expressed -
12 Sobic.008G086200 expressed protein -
13 Sobic.002G348700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carboxyl-terminal peptidase, putative, expressed -
14 Sobic.006G167300 AGC_PVPK_like_kin82y.11 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
15 Sobic.003G346000 IQ calmodulin-binding motif domain containing protein, expressed -
16 Sobic.007G063200 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
17 Sobic.001G179000 DNA-directed RNA polymerase subunit, putative, expressed K03014: RPB6, DNA-directed RNA polymerases I, II, and III subunit RPABC2
18 Sobic.004G205500 expressed protein -
19 Sobic.004G227500 WD-40 repeat family protein, putative, expressed -
20 Sobic.010G163900 BES1/BZR1 homolog protein, putative, expressed -


Gene co-expression network
sample Sobic009G164900 Sobic009G164900 Sobic002G007200 Sobic002G007200 Sobic009G164900--Sobic002G007200 Sobic003G380500 Sobic003G380500 Sobic009G164900--Sobic003G380500 Sobic001G216600 Sobic001G216600 Sobic009G164900--Sobic001G216600 Sobic003G356200 Sobic003G356200 Sobic009G164900--Sobic003G356200 Sobic001G217100 Sobic001G217100 Sobic009G164900--Sobic001G217100 Sobic004G229100 Sobic004G229100 Sobic009G164900--Sobic004G229100 Sobic009G011500 Sobic009G011500 Sobic009G164900--Sobic009G011500 Sobic007G195400 Sobic007G195400 Sobic009G164900--Sobic007G195400 Sobic002G157200 Sobic002G157200 Sobic009G164900--Sobic002G157200 Sobic006G262600 Sobic006G262600 Sobic002G007200--Sobic006G262600 Sobic002G007200--Sobic003G380500 Sobic002G007200--Sobic009G164900 Sobic006G133600 Sobic006G133600 Sobic002G007200--Sobic006G133600 Sobic002G334600 Sobic002G334600 Sobic002G007200--Sobic002G334600 Sobic009G064900 Sobic009G064900 Sobic002G007200--Sobic009G064900 Sobic002G367300 Sobic002G367300 Sobic002G007200--Sobic002G367300 Sobic004G287800 Sobic004G287800 Sobic002G007200--Sobic004G287800 Sobic004G205500 Sobic004G205500 Sobic002G007200--Sobic004G205500 Sobic003G380500--Sobic006G262600 Sobic003G380500--Sobic002G007200 Sobic001G179000 Sobic001G179000 Sobic003G380500--Sobic001G179000 Sobic002G221700 Sobic002G221700 Sobic003G380500--Sobic002G221700 Sobic007G191100 Sobic007G191100 Sobic003G380500--Sobic007G191100 Sobic003G380500--Sobic009G164900 Sobic004G250700 Sobic004G250700 Sobic003G380500--Sobic004G250700 Sobic003G380500--Sobic007G195400 Sobic007G008800 Sobic007G008800 Sobic003G380500--Sobic007G008800 Sobic001G216600--Sobic007G195400 Sobic001G309100 Sobic001G309100 Sobic001G216600--Sobic001G309100 Sobic001G216600--Sobic009G164900 Sobic003G437500 Sobic003G437500 Sobic001G216600--Sobic003G437500 Sobic004G119000 Sobic004G119000 Sobic001G216600--Sobic004G119000 Sobic004G150400 Sobic004G150400 Sobic001G216600--Sobic004G150400 Sobic001G216600--Sobic002G334600 Sobic002G272800 Sobic002G272800 Sobic001G216600--Sobic002G272800 Sobic004G349100 Sobic004G349100 Sobic001G216600--Sobic004G349100 Sobic003G356200--Sobic009G164900 Sobic001G350501 Sobic001G350501 Sobic003G356200--Sobic001G350501 Sobic002G348000 Sobic002G348000 Sobic003G356200--Sobic002G348000 Sobic007G063200 Sobic007G063200 Sobic003G356200--Sobic007G063200 Sobic003G026300 Sobic003G026300 Sobic003G356200--Sobic003G026300 Sobic003G356200--Sobic003G380500 Sobic003G346000 Sobic003G346000 Sobic003G356200--Sobic003G346000 Sobic006G109300 Sobic006G109300 Sobic003G356200--Sobic006G109300 Sobic003G356200--Sobic004G229100 Sobic001G217100--Sobic004G229100 Sobic003G132700 Sobic003G132700 Sobic001G217100--Sobic003G132700 Sobic006G067700 Sobic006G067700 Sobic001G217100--Sobic006G067700 Sobic002G223300 Sobic002G223300 Sobic001G217100--Sobic002G223300 Sobic001G217100--Sobic002G334600 Sobic001G217100--Sobic009G164900 Sobic001G019200 Sobic001G019200 Sobic001G217100--Sobic001G019200 Sobic002G430900 Sobic002G430900 Sobic001G217100--Sobic002G430900 Sobic002G002100 Sobic002G002100 Sobic001G217100--Sobic002G002100 Sobic004G229100--Sobic001G217100 Sobic004G078100 Sobic004G078100 Sobic004G229100--Sobic004G078100 Sobic009G192500 Sobic009G192500 Sobic004G229100--Sobic009G192500 Sobic004G229100--Sobic003G132700 Sobic007G046900 Sobic007G046900 Sobic004G229100--Sobic007G046900 Sobic004G229100--Sobic009G164900 Sobic002G089900 Sobic002G089900 Sobic004G229100--Sobic002G089900 Sobic009G018000 Sobic009G018000 Sobic004G229100--Sobic009G018000 Sobic002G095700 Sobic002G095700 Sobic004G229100--Sobic002G095700 Sobic001G045700 Sobic001G045700 Sobic009G011500--Sobic001G045700 Sobic009G011500--Sobic009G164900 Sobic009G011500--Sobic002G367300 Sobic002G060450 Sobic002G060450 Sobic009G011500--Sobic002G060450 Sobic004G227500 Sobic004G227500 Sobic009G011500--Sobic004G227500 Sobic006G022500 Sobic006G022500 Sobic009G011500--Sobic006G022500 Sobic002G049000 Sobic002G049000 Sobic009G011500--Sobic002G049000 Sobic010G173900 Sobic010G173900 Sobic009G011500--Sobic010G173900 Sobic001G065300 Sobic001G065300 Sobic009G011500--Sobic001G065300 Sobic003G359300 Sobic003G359300 Sobic007G195400--Sobic003G359300 Sobic004G061900 Sobic004G061900 Sobic007G195400--Sobic004G061900 Sobic008G034600 Sobic008G034600 Sobic007G195400--Sobic008G034600 Sobic007G195400--Sobic007G191100 Sobic006G129700 Sobic006G129700 Sobic007G195400--Sobic006G129700 Sobic003G093600 Sobic003G093600 Sobic007G195400--Sobic003G093600 Sobic007G195400--Sobic001G216600 Sobic002G058300 Sobic002G058300 Sobic007G195400--Sobic002G058300 Sobic003G115100 Sobic003G115100 Sobic007G195400--Sobic003G115100 Sobic002G157200--Sobic008G034600 Sobic007G224900 Sobic007G224900 Sobic002G157200--Sobic007G224900 Sobic004G211400 Sobic004G211400 Sobic002G157200--Sobic004G211400 Sobic002G157200--Sobic001G045700 Sobic006G210200 Sobic006G210200 Sobic002G157200--Sobic006G210200 Sobic002G157200--Sobic002G049000 Sobic009G022200 Sobic009G022200 Sobic002G157200--Sobic009G022200 Sobic002G421700 Sobic002G421700 Sobic002G157200--Sobic002G421700 Sobic002G061400 Sobic002G061400 Sobic002G157200--Sobic002G061400
Octagon: transcription factors


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